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DeepSSM input verification #2196

Merged
merged 28 commits into from
Feb 6, 2024
Merged

DeepSSM input verification #2196

merged 28 commits into from
Feb 6, 2024

Commits on Jan 29, 2024

  1. Throw exception when number of original domains doesn't match.

    @akenmorris
    akenmorris committed Jan 29, 2024
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  2. When images or original files are not present, disallow deepssm mode

    @akenmorris
    akenmorris committed Jan 29, 2024
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  3. Throw useful exception when image size will be too small.

    @akenmorris
    akenmorris committed Jan 29, 2024
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Commits on Jan 30, 2024

  1. Add timing to steps of prep.

    @akenmorris
    akenmorris committed Jan 30, 2024
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Commits on Jan 31, 2024

  1. Add one more timer

    @akenmorris
    akenmorris committed Jan 31, 2024
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  2. Set Eigen threads to the same as TBB. 

    This came about due to a bug or unexpected interaction with calling DeepSSM commands from Studio.  After the image registration stuff runs, the OpenMP thread count is set to a crazy high level (e.g. 384 on a 16-core machine), which results in poor eigen performance per this page:

https://eigen.tuxfamily.org/dox/TopicMultiThreading.html

"Warning: On most OS it is very important to limit the number of threads to the number of physical cores, otherwise significant slowdowns are expected, especially for operations involving dense matrices."
    @akenmorris
    akenmorris committed Jan 31, 2024
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  3. Add Fine Tuning plot, combine csv

    @akenmorris
    akenmorris committed Jan 31, 2024
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  4. Fix logger being closed for FT

    @akenmorris
    akenmorris committed Jan 31, 2024
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  5. Allow decay LR to be off

    @akenmorris
    akenmorris committed Jan 31, 2024
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  6. Fix formatting

    @akenmorris
    akenmorris committed Jan 31, 2024
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  7. Reinitialze optimizer for fine tuning, use fine tuning learning rate

    @akenmorris
    akenmorris committed Jan 31, 2024
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  8. Parse table doubles and limit precision for display.

    @akenmorris
    akenmorris committed Jan 31, 2024
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  9. Fix table display (digits)

    @akenmorris
    akenmorris committed Jan 31, 2024
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Commits on Feb 1, 2024

  1. Update parameter names and tooltips

    @akenmorris
    akenmorris committed Feb 1, 2024
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  2. Reorganize DeepSSM Prep dialog a bit. 

    Change percent variability to be consistent
Add read-only training percent to show the user the amount that will be used.
    @akenmorris
    akenmorris committed Feb 1, 2024
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  3. Update screenshot.

    @akenmorris
    akenmorris committed Feb 1, 2024
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Commits on Feb 5, 2024

  1. Improve test mesh loading

    @akenmorris
    akenmorris committed Feb 5, 2024
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  2. Merge branch 'deepssm_changes' into deepssm_input_verification

    @akenmorris
    akenmorris committed Feb 5, 2024
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  3. Fix TL-DeepSSM when Decay Learning is off.

    @akenmorris
    akenmorris committed Feb 5, 2024
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  4. Replace shapeworks executable usage with Python API of MeshWarper.

    @akenmorris
    akenmorris committed Feb 5, 2024
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  5. Fix typos

    @akenmorris
    akenmorris committed Feb 5, 2024
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  6. Simplify and improve get_mesh_distance, also write back distance fiel… 

    …d to prediction mesh.
    @akenmorris
    akenmorris committed Feb 5, 2024
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  7. Add more room for image spacing.

    @akenmorris
    akenmorris committed Feb 5, 2024
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  8. Add ability to set reconstructed meshes directly.

    @akenmorris
    akenmorris committed Feb 5, 2024
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  9. Shift test mesh distance calc and results into Python from Studio.

    @akenmorris
    akenmorris committed Feb 5, 2024
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  10. Fix compile

    @akenmorris
    akenmorris committed Feb 5, 2024
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  11. Fix image name for train/test when image is not already selected.

    @akenmorris
    akenmorris committed Feb 5, 2024
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Commits on Feb 6, 2024

  1. Fix problem with boost create_directories

    @akenmorris
    akenmorris committed Feb 6, 2024
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