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more genbank submission documentation updates
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updated the trace section screenshot to reflect newest plugin version
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MikeTrizna committed Dec 11, 2015
1 parent 2b107b4 commit 0b1407e
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12 changes: 4 additions & 8 deletions Docs/gb_upload.rst
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Expand Up @@ -165,9 +165,6 @@ PCR Primers are a required component of the Barcode Data Standard. You will need
Traces and Sequencing Primers
-----------------------------

.. note::
This component of the Geneious GenBank Submission Plug-in will be changing in the future, but for now follow these instructions for each field.

Experimental Strategy
Choose "BARCODE" for this field if you are creating a submission for one of the official BARCODE gene regions (COI for animals, or rbcL and matK for plants). If you are submitting another region, then choose "TARGETED LOCUS".

Expand All @@ -183,15 +180,14 @@ Base Calling Program
DNA Source Type
This will always be "Genomic DNA".

Species Code
Choose "scientificName" for this field.

Trace End
Leave this as the default value of "*Let Geneious determine*"

.. image:: /images/traces_defaults.png
.. figure:: /images/trace_defaults.png
:align: center
:target: /en/latest/_images/traces_defaults.png
:target: /en/latest/_images/trace_defaults.png

**If your version of the Geneious plug-in does not show this exact set of field options for "Traces", then you need to upgrade to version 6.2.**

Just like for the previous "PCR Primers" section, these fields should all be populated by Geneious automatically.

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