This documentation site describes the best practices for the informatics pipeline of the SI Barcode Network.
.. toctree::
:caption: Background
workflow
software_components
software_updates
barcode_data_standard
conventions
.. toctree::
:maxdepth: 2
:caption: FIMS
fims_spreadsheet_pop
fims_spreadsheet_val
.. toctree::
:maxdepth: 2
:caption: LIMS
geneious_intro
biocode_plugin
extraction_plates
pcr_plates
cyclesequencing_plates
cherry_picking
.. toctree::
:maxdepth: 2
:caption: Assembly and Quality Control
downloading_traces
assembling_contigs
sequence_qc_v2
batch_rename
annotating_fims_lims
mark_pass
exporting_fasta
exporting_metadata
BLAST
.. toctree::
:maxdepth: 2
:caption: Data Publication
gb_upload_sub_portal
gb_upload_Geneious_plugin
noncoding_annotation
rapid_data_release
gb_update
bioprojects
BOLD_tips