As the workshop series progresses this repository will be filled with the contents of each instance.
Planned instances (dates and topics are not set in stone):
- Session29: Introduction to the command line
- Tools for Reproducible Data Science
- High Performance Clusters: How to get resources
- Project planning with statistics in mind
- Data management
- Sequencing techniques
- Quality control in sequencing data
- Running pipelines with nf-core
- Control your environment with Conda/ Pixi
If there is a topic you would like to hear about, please fill out our questionnaire to influence the schedule for the next round of workshops.
Past instances:
- Session01: 13th Nov 2023 Introduction to R
- Session02: 27th Nov 2023 Linux Basics
- Session03: 11th Dec 2023 PCA: Theory and Practice
- Session04: 15th Jan 2024 Introduction to Markdown
- Session05: 12th Feb 2024 Population Structure
- Session06: 26th Feb 2024 How to write functions in R
- Session07: 11th Mar 2024 Introduction to Python
- Session08: 25th Mar 2024 Introduction to Neural Networks
- Session09: 08th Apr 2024 Intermediate ggplot in R
- Session10: 06th May 2024 Introduction to High Performance Computing
- Session11: 20th May 2024 Tools and tricks for reproducible research
- Session12: 03rd Jun 2024 Introduction to git
- Session13: 17th Jun 2024 Project organization in R
- Session14: 01st Jul 2024 interactive visualization in R "shiny"
- Session15: 23rd Sep 2024 Introduction to Linux
- Session16: 07th Oct 2024 Introduction to Dardel
- Session17: 21st Oct 2024 Introduction to R
- Session18: 02nd Dec 2024 PCA: Theory and Practice
- Session19: 13th Jan 2025 Introduction to Python
- Session20: 10th Feb 2025 Reporting with Markdown
- Session21: 24th Feb 2025 Make reports, presentations and hompages in Quarto
- Session22: 10th Mar 2025 Common statistical tests
- Session23: 24nd Mar 2025 Data Management Resources at SLU
- Session24: 07th Apr 2025 Make pretty graphics - learn to ggplot in R
- Session25: 05th May 2025 Q&A on Dardel, with HPC support staff
- Session26: 19th May 2025 Working with Bioinformatics Containers
- Session27: 03rd Nov 2025 Introduction to R
- Session28: 17th Nov 2025 Visual Studio Code
For more information please visit www.slubi.se.