PLAS

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title: PLAS tags: [maunal, tools] date: 7/27/2016 6:40:22 PM

GCModeller [version 1.0.0.0]

Module AssemblyName: file:///G:/GCModeller/manual/bin/PLAS.exe Root namespace: PLAS.CLI

All of the command that available in this program has been list below:

Function API	Info
Compile	Compile a script file or sbml file into the plas model file.
Run	run a model file of the biochemical network system.

Commands

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Help for command 'Compile':

Prototype: PLAS.CLI::Int32 Compile(Microsoft.VisualBasic.CommandLine.CommandLine)

  Information:  Compile a script file or sbml file into the plas model file.
  Usage:        G:\GCModeller\manual\bin\PLAS.exe compile -i <file> -f <script/sbml> -o <output_file> [/auto-fix]
  Example:      PLAS Compile compile -i "/home/xieguigang/proj/metacyc/xcc8004/17.0/data/metabolic-reactions.sbml" -f sbml -o "/home/xieguigang/Desktop/xcc8004.xml"

Help for command 'Run':

Prototype: PLAS.CLI::Int32 Run(Microsoft.VisualBasic.CommandLine.CommandLine)

  Information:  run a model file of the biochemical network system.
  Usage:        G:\GCModeller\manual\bin\PLAS.exe run -i <model_file> -f <script/model/sbml> -chart <T/F> -o <output_csv>
  Example:      PLAS Run run -i "/home/xieguigang/proj/xcc8004.sbml" -f sbml -chart T -o "/home/xieguigang/Desktop/xcc8004.csv"

Parameters information:

    -i
    Description:  The file path of the input model file that will be run on the PLAS program.

    Example:      -i "/home/xieguigang/proj/xcc8004.sbml"

-o
    Description:  The file path of the output data file for the calculation.

    Example:      -o "/home/xieguigang/Desktop/xcc8004.csv"

   [-f]
    Description:  This parameter specific that the file format of the model file which will be run on the PLAS program.
 script - The input file that specific by the switch parameter "-i" is a PLAS script file,
 model - The input file is a compiled PLAS model, run it directly,
 sbml - The input file is a sbml model file, it needs to be compiled to a PLAS model first.

    Example:      -f "model"

   [-chart]
    Description:  Optional, This switch specific that PLAS displaying a chart windows after the calculation or not, default is F for not displaying.
 T - (True) display a chart window after the calculation,
 F - (False) not display a chart window after the calculation.

    Example:      -chart "/home/xieguigang/proj/xcc8004.sbml"

Accepted Types

-i

-o

-f

-chart