README.md

[Xanthomonas campestris pv. campestris 8004] GCModeller vcell Modelling Project

It is recommended that you can using this project as the GCModeller demo & tutorials

DataSource

• NCBI genbank data: Xanthomonas campestris pv. campestris str. 8004, complete genome
• NCBI ftp directory:
• RNA-seq data from public database:

Directory Roadmap

• ./genbank: NCBI genbank annotation information
• ./genome: GCModeller genomics annotation result
  • ./genome/circos/: circos plot of the genome.
  • ./genome/chromsome-map/: chromsome map plot of the bacterial genome.
  • ./genome/COG/: The COG annotation sbh result.
• ./pathway: GCModeller Pathway network model
• ./proteome:

Data Figures

Xcc8004 genome function

genome map plot

View detail in ./genome/chromsome-map/

promoter region palindrome cluster tree

References