Update uses of gsd API for all hoomd examples

SSAGESLabs · Jul 12, 2023 · 63387ef · 63387ef
1 parent db21c90
commit 63387ef
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Showing 12 changed files with 12 additions and 12 deletions.
diff --git a/examples/hoomd-blue/harmonic_bias/Harmonic_Bias.ipynb b/examples/hoomd-blue/harmonic_bias/Harmonic_Bias.ipynb
@@ -258,7 +258,7 @@
     "snap = get_snap(system)\n",
     "snap = post_process_pos(snap)\n",
     "snap.particles.validate()\n",
-    "with gsd.hoomd.open(\"harmonic_start.gsd\", \"wb\") as f:\n",
+    "with gsd.hoomd.open(\"harmonic_start.gsd\", \"w\") as f:\n",
     "   f.append(snap)\n"
    ]
   },

diff --git a/examples/hoomd-blue/harmonic_bias/Harmonic_Bias.md b/examples/hoomd-blue/harmonic_bias/Harmonic_Bias.md
@@ -158,7 +158,7 @@ system = System()
 snap = get_snap(system)
 snap = post_process_pos(snap)
 snap.particles.validate()
-with gsd.hoomd.open("harmonic_start.gsd", "wb") as f:
+with gsd.hoomd.open("harmonic_start.gsd", "w") as f:
    f.append(snap)
 
 ```

diff --git a/examples/hoomd-blue/harmonic_bias/gen_gsd.py b/examples/hoomd-blue/harmonic_bias/gen_gsd.py
@@ -48,7 +48,7 @@ def main(argv):
     snap = get_snap(system)
     snap = post_process_pos(snap)
     snap.particles.validate()
-    with gsd.hoomd.open("start.gsd", "wb") as f:
+    with gsd.hoomd.open("start.gsd", "w") as f:
         f.append(snap)
 
 

diff --git a/examples/hoomd-blue/string/gen_gsd.py b/examples/hoomd-blue/string/gen_gsd.py
@@ -56,7 +56,7 @@ def main(argv):
     snap = get_snap(system)
     snap = post_process_pos(snap)
     snap.particles.validate()
-    with gsd.hoomd.open("start.gsd", "wb") as f:
+    with gsd.hoomd.open("start.gsd", "w") as f:
         f.append(snap)
 
 

diff --git a/examples/hoomd-blue/umbrella_integration/Umbrella_Integration.ipynb b/examples/hoomd-blue/umbrella_integration/Umbrella_Integration.ipynb
@@ -302,7 +302,7 @@
     "snap = get_snap(system)\n",
     "snap = post_process_pos(snap)\n",
     "snap.particles.validate()\n",
-    "with gsd.hoomd.open(\"start.gsd\", \"wb\") as f:\n",
+    "with gsd.hoomd.open(\"start.gsd\", \"w\") as f:\n",
     "    f.append(snap)\n"
    ]
   },

diff --git a/examples/hoomd-blue/umbrella_integration/Umbrella_Integration.md b/examples/hoomd-blue/umbrella_integration/Umbrella_Integration.md
@@ -154,7 +154,7 @@ system = System()
 snap = get_snap(system)
 snap = post_process_pos(snap)
 snap.particles.validate()
-with gsd.hoomd.open("start.gsd", "wb") as f:
+with gsd.hoomd.open("start.gsd", "w") as f:
     f.append(snap)
 
 ```

diff --git a/examples/hoomd-blue/umbrella_integration/gen_gsd.py b/examples/hoomd-blue/umbrella_integration/gen_gsd.py
@@ -56,7 +56,7 @@ def main(argv):
     snap = get_snap(system)
     snap = post_process_pos(snap)
     snap.particles.validate()
-    with gsd.hoomd.open("start.gsd", "wb") as f:
+    with gsd.hoomd.open("start.gsd", "w") as f:
         f.append(snap)
 
 

diff --git a/examples/hoomd-blue/unbiased/gen_gsd.py b/examples/hoomd-blue/unbiased/gen_gsd.py
@@ -48,7 +48,7 @@ def main(argv):
     snap = get_snap(system)
     snap = post_process_pos(snap)
     snap.particles.validate()
-    with gsd.hoomd.open("start.gsd", "wb") as f:
+    with gsd.hoomd.open("start.gsd", "w") as f:
         f.append(snap)
 
 

diff --git a/examples/hoomd3/harmonic_bias/gen_gsd.py b/examples/hoomd3/harmonic_bias/gen_gsd.py
@@ -48,7 +48,7 @@ def main(argv):
     snap = get_snap(system)
     snap = post_process_pos(snap)
     snap.particles.validate()
-    with gsd.hoomd.open("start.gsd", "wb") as f:
+    with gsd.hoomd.open("start.gsd", "w") as f:
         f.append(snap)
 
 

diff --git a/examples/hoomd3/string/gen_gsd.py b/examples/hoomd3/string/gen_gsd.py
@@ -56,7 +56,7 @@ def main(argv):
     snap = get_snap(system)
     snap = post_process_pos(snap)
     snap.particles.validate()
-    with gsd.hoomd.open("start.gsd", "wb") as f:
+    with gsd.hoomd.open("start.gsd", "w") as f:
         f.append(snap)
 
 

diff --git a/examples/hoomd3/umbrella_integration/gen_gsd.py b/examples/hoomd3/umbrella_integration/gen_gsd.py
@@ -56,7 +56,7 @@ def main(argv):
     snap = get_snap(system)
     snap = post_process_pos(snap)
     snap.particles.validate()
-    with gsd.hoomd.open("start.gsd", "wb") as f:
+    with gsd.hoomd.open("start.gsd", "w") as f:
         f.append(snap)
 
 

diff --git a/examples/hoomd3/unbiased/gen_gsd.py b/examples/hoomd3/unbiased/gen_gsd.py
@@ -48,7 +48,7 @@ def main(argv):
     snap = get_snap(system)
     snap = post_process_pos(snap)
     snap.particles.validate()
-    with gsd.hoomd.open("start.gsd", "wb") as f:
+    with gsd.hoomd.open("start.gsd", "w") as f:
         f.append(snap)