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make-activity

The commit history of this repository reflects what a student might do as she works through this activity from STAT 545. This fully developed example shows:

  • How to run an R script non-interactively
  • How to use make
    • to record which files are inputs vs. intermediates vs. outputs
    • to capture how scripts and commands convert inputs to outputs
    • to re-run parts of an analysis that are out-of-date
  • The intersection of R and make, i.e. how to
    • run snippets of R code
    • run an entire R script
    • render an R Markdown document (or R script)
  • The interface between RStudio and make
  • How to use make from the shell
  • How Git facilitates the process of building a pipeline

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Walks through the hands-on activity showing how to automate a data analytical pipeline with make

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