GitHub - SavirLab/AgingOvarianImmuneMilieu: Analysis of scRNA-seq of young and old murine ovaries' CD45+ cells

SavirLab / AgingOvarianImmuneMilieu Public

Analysis of scRNA-seq of young and old murine ovaries' CD45+ cells

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Name		Name	Last commit message	Last commit date
Latest commit History 13 Commits
REVIGO		REVIGO
16_1.mat		16_1.mat
19_12.mat		19_12.mat
22_5.mat		22_5.mat
25_7.mat		25_7.mat
9_8.mat		9_8.mat
Age_vec.csv		Age_vec.csv
AnalysisCode.m		AnalysisCode.m
BatchCorrection_MILO.R		BatchCorrection_MILO.R
Calc_tSNE_Parameters_Fig1_2.r		Calc_tSNE_Parameters_Fig1_2.r
Chemokine network_KEGG_template.xlsx		Chemokine network_KEGG_template.xlsx
ChordGraph.r		ChordGraph.r
Cluster_idnts.csv		Cluster_idnts.csv
Cytokine_network_template.xlsx		Cytokine_network_template.xlsx
DC_analysis.m		DC_analysis.m
DataLoading.m		DataLoading.m
REVIGO_Down_Common.xlsx		REVIGO_Down_Common.xlsx
R_10X_populations.mat		R_10X_populations.mat
Set_fig_YS.m		Set_fig_YS.m
Violin.m		Violin.m
Violin_age.m		Violin_age.m
age_factor.csv		age_factor.csv
chemokine_network_qval0.1_pval0.05.xlsx		chemokine_network_qval0.1_pval0.05.xlsx
classification_old_fine.xlsx		classification_old_fine.xlsx
classification_young_fine_2.xlsx		classification_young_fine_2.xlsx
cytokine_network_qval0.1_pval0.05.xlsx		cytokine_network_qval0.1_pval0.05.xlsx
mmread.m		mmread.m
prop_test.m		prop_test.m
spider_plot.m		spider_plot.m
tSNE_coordinates.csv		tSNE_coordinates.csv
tsnecorr_w_batch.csv		tsnecorr_w_batch.csv
tsnecorr_w_batch_clusters.csv		tsnecorr_w_batch_clusters.csv
tsnecorr_wo_batch.csv		tsnecorr_wo_batch.csv
tsnecorr_wo_batch_clusters.csv		tsnecorr_wo_batch_clusters.csv
violinplot.m		violinplot.m
violinplot_ys_lite.m		violinplot_ys_lite.m