HD_Colocalization relaease for "Mutant Huntingtin impairs neurodevelopment in human brain organoids through CHCHD2-mediated neurometabolic failure"

Quantification & Colocalization
This repository contains the files used to quantify and analyze the colocalization of three different fluorescent markers per image of a cell culture. This works with whole folder structure, where each folder within a working directory contains the images of one cell line or treatment condition. If there is just one folder, the analysis is done for all images in this folder and compares the cell lines or treatment in regards to their file names. Some modifications need to be done to the scripts to make them work for different data sets.
The different cell lines or treatment conditions can be compared to check for significant differences in the amount of signal of the markers or the colocalization of the markers.

This release contains the code and settings written for the paper "Mutant Huntingtin impairs neurodevelopment in human brain organoids through CHCHD2-mediated neurometabolic failure".