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@SchapiroLabor

Schapiro Lab

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  1. histoCAT histoCAT Public

    Histology Topography Cytometry Analysis Toolbox

    MATLAB 64 23

  2. micronuclAI micronuclAI Public

    Automated identification of micronuclei for chromosomal instability (CIN) quantification.

    Python 5

  3. Background_subtraction Background_subtraction Public

    Background subtraction for COMET platform

    Python 5 2

  4. mi_spatialomics mi_spatialomics Public

    Data analysis for “Spatial omics of acute myocardial infarction reveals a novel mode of immune cell infiltration”

    Jupyter Notebook 2

  5. Segmentation_prep Segmentation_prep Public

    Image preprocessing for different segmentation approaches.

    Python 2

  6. micronuclAI_streamlit micronuclAI_streamlit Public

    This repository contains a streamlit app for CIN inferences based on the micronuclAI tool

    Python 2

Repositories

Showing 10 of 31 repositories
  • phenoimager2mc Public

    Formatting tif/ome-tif metadata for MCMICRO staging modules

    SchapiroLabor/phenoimager2mc’s past year of commit activity
    Jupyter Notebook 0 GPL-2.0 0 0 0 Updated Jul 19, 2024
  • multiplex_macsima Public

    utitilies for macsima image sets

    SchapiroLabor/multiplex_macsima’s past year of commit activity
    Python 1 MIT 1 1 0 Updated Jul 18, 2024
  • micronuclAI_streamlit Public

    This repository contains a streamlit app for CIN inferences based on the micronuclAI tool

    SchapiroLabor/micronuclAI_streamlit’s past year of commit activity
    Python 2 AGPL-3.0 0 0 0 Updated Jul 9, 2024
  • spot2cell Public

    Tool to assign FISH spots to their corresponding cell

    SchapiroLabor/spot2cell’s past year of commit activity
    Python 2 AGPL-3.0 0 0 0 Updated Jun 25, 2024
  • mcmicro Public Forked from labsyspharm/mcmicro

    Multiple-choice microscopy pipeline

    SchapiroLabor/mcmicro’s past year of commit activity
    Nextflow 0 MIT 59 0 0 Updated Jun 22, 2024
  • mask2bbox Public

    Useful tools for converting segmentation masks into bounding box objects.

    SchapiroLabor/mask2bbox’s past year of commit activity
    Python 2 AGPL-3.0 0 0 0 Updated Jun 19, 2024
  • norm_methods Public

    A single repo of all available/potential tabular normalization methods for downstream analysis of spatial proteomics datasets.

    SchapiroLabor/norm_methods’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Jun 12, 2024
  • micronuclAI Public

    Automated identification of micronuclei for chromosomal instability (CIN) quantification.

    SchapiroLabor/micronuclAI’s past year of commit activity
    Python 5 AGPL-3.0 0 0 0 Updated Jun 3, 2024
  • micronuclAI_labeling Public
    SchapiroLabor/micronuclAI_labeling’s past year of commit activity
    Python 0 AGPL-3.0 0 0 0 Updated May 29, 2024
  • mi_spatialomics Public

    Data analysis for “Spatial omics of acute myocardial infarction reveals a novel mode of immune cell infiltration”

    SchapiroLabor/mi_spatialomics’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Apr 24, 2024
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