add missing description tags in scripts.

apps/public/rosetta/RunRosettaDBMode.py

@@ -4,7 +4,7 @@
 from argparse import ArgumentParser
 
 def get_parser():
-    parser = ArgumentParser("This program runs Rosetta MPI locally or on a cluster using slurm or qsub.  "
+    parser = ArgumentParser(description="This program runs Rosetta MPI locally or on a cluster using slurm or qsub.  "
                                         "Relative paths are accepted.")
     return parser
 

apps/public/rosetta/RunRosettaMPI.py

@@ -4,7 +4,7 @@
 from argparse import ArgumentParser
 
 def get_parser():
-    parser = ArgumentParser("This program runs Rosetta MPI locally or on a cluster using slurm or qsub.  "
+    parser = ArgumentParser(description="This program runs Rosetta MPI locally or on a cluster using slurm or qsub.  "
                                         "Relative paths are accepted.")
     return parser
 

apps/public/rosetta/check_missing_rosetta_nstruct.py

@@ -9,7 +9,7 @@
 from collections import defaultdict
 
 def get_parser():
-    parser = ArgumentParser("This extremely simple script checks nstruct of the input files and outputs which nstruct number is missing.")
+    parser = ArgumentParser(description="This extremely simple script checks nstruct of the input files and outputs which nstruct number is missing.")
 
 
     parser.add_argument('-n', "--nstruct", default=1000)

apps/public/rosetta/create_score_json_from_scored_decoys.py

@@ -18,7 +18,7 @@ def get_pdbs(argu):
 
 
 def get_parser():
-    parser = ArgumentParser("This script creates a Rosetta score file from a set of structures - by parsing the score from them. Pass a directory, a PDBLIST, and/or a list of filenames")
+    parser = ArgumentParser(description="This script creates a Rosetta score file from a set of structures - by parsing the score from them. Pass a directory, a PDBLIST, and/or a list of filenames")
 
 
     parser.add_argument("--prefix",

apps/public/rosetta/insert_natives_table_into_features_db.py

@@ -6,7 +6,7 @@
 
 
 def get_parser():
-    parser = ArgumentParser("This script takes a PDBLIST of natives and then adds a new table to the database with "
+    parser = ArgumentParser(description="This script takes a PDBLIST of natives and then adds a new table to the database with "
                             "struct_id as proper foreign primary key and the native structure based solely on a search of the name tag. ")
 
     parser.add_argument("--pdblist", help = "PDBLIST of native structures used.")

apps/public/rosetta/score_analysis.py

@@ -25,7 +25,7 @@ def printVerbose(s):
 def get_parser():
 
     parser = ArgumentParser(
-        "This utility parses and extracts data from score files in JSON format")
+        description="This utility parses and extracts data from score files in JSON format")
 
     parser.add_argument("scorefiles", nargs='*', help="A list of scorefiles")