README

Dependencies and locations

• GNU bash (v.4.1.2)
• Gnu Make (v.3.81) should be located in the user's PATH
• R (v. 3.3.2) should be located in the user's PATH
• The following R packages should be installed:
  • rentrez (v.1.0.4)
  • XML (v.#.#.#)

install.packages(c("rentrez", "XML"))

Running analysis

git clone https://github.com/SchlossLab/Casadeval_SocietyJs_mBio_2017.git
make write.paper