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Create unit test for plot_model_performance() #300

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36 changes: 21 additions & 15 deletions README.md
Expand Up @@ -54,9 +54,9 @@ mamba install -c conda-forge r-mikropml

### Dependencies

- Imports: caret, dplyr, e1071, glmnet, kernlab, MLmetrics,
- Imports: caret, dplyr, e1071, glmnet, kernlab, MLmetrics,
randomForest, rlang, rpart, stats, utils, xgboost
- Suggests: doFuture, foreach, future, future.apply, ggplot2, knitr,
- Suggests: doFuture, foreach, future, future.apply, ggplot2, knitr,
progress, progressr, purrr, rmarkdown, testthat, tidyr

## Usage
Expand Down Expand Up @@ -107,29 +107,35 @@ license](https://creativecommons.org/licenses/by/4.0/).

To cite mikropml in publications, use:

>
>
> <p>
>
> Topçuoğlu BD, Lapp Z, Sovacool KL, Snitkin E, Wiens J, Schloss PD
> (2021). “mikropml: User-Friendly R Package for Supervised Machine
> Learning Pipelines.” <em>Journal of Open Source Software</em>,
> <b>6</b>(61), 3073.
> <a href="https://doi.org/10.21105/joss.03073">doi:10.21105/joss.03073</a>,
> <a href="https://joss.theoj.org/papers/10.21105/joss.03073">https://joss.theoj.org/papers/10.21105/joss.03073</a>.
>
> </p>

A BibTeX entry for LaTeX users is:

@Article{,
title = {{mikropml}: User-Friendly R Package for Supervised Machine Learning Pipelines},
author = {Begüm D. Topçuoğlu and Zena Lapp and Kelly L. Sovacool and Evan Snitkin and Jenna Wiens and Patrick D. Schloss},
journal = {Journal of Open Source Software},
year = {2021},
month = {May},
volume = {6},
number = {61},
pages = {3073},
doi = {10.21105/joss.03073},
url = {https://joss.theoj.org/papers/10.21105/joss.03073},
}
```
@Article{,
title = {{mikropml}: User-Friendly R Package for Supervised Machine Learning Pipelines},
author = {Begüm D. Topçuoğlu and Zena Lapp and Kelly L. Sovacool and Evan Snitkin and Jenna Wiens and Patrick D. Schloss},
journal = {Journal of Open Source Software},
year = {2021},
month = {May},
volume = {6},
number = {61},
pages = {3073},
doi = {10.21105/joss.03073},
url = {https://joss.theoj.org/papers/10.21105/joss.03073},
}
```

## Why the name?

Expand All @@ -138,4 +144,4 @@ This package was originally implemented as a machine learning pipeline
for microbiome-based classification problems (see [Topçuoğlu *et al.*
2020](https://doi.org/10.1128/mBio.00434-20)). We realized that these
methods are applicable in many other fields too, but stuck with the name
because we like it!
because we like it\!
4 changes: 2 additions & 2 deletions docs/dev/CODE_OF_CONDUCT.html

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4 changes: 2 additions & 2 deletions docs/dev/CONTRIBUTING.html

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