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Create log_snakemake() function #35
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kelly-sovacool
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a team and
sklucas
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June 30, 2022 18:09
sklucas
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Jul 13, 2022
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Seems like a really useful function!
@sklucas I have been copy-pasting it into my Snakemake + R projects so often that it became absurd for it to not be in a package somewhere. Many thanks! |
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Change(s) made
log_snakemake()
, which redirects output to a log file when it is called from a Snakemake rule and a rule-specific log file is defined.log_snakemake()
reports that no log file exists if that's the case andquiet = FALSE
. However, it doesn't seem possible to test that it creates a log file withsink()
, as testthat seems to prevent that from happening. It does work when run from the console.Checklist
(
Strikethroughany points that are not applicable.)NEWS.md
if this includes any user-facing changes.