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Update Output.rst
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skarunan committed Feb 28, 2020
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Expand Up @@ -8,7 +8,7 @@ Statistics

An output folder is created, for each annotation BED file supplied in **rapidStats** analysis, with the following files:

* Statistics.dat - A tab-separated file that contains a number of statistics for each region including read counts, number of read modifications and coverage on DNA strands
* Statistics.dat - A tab-separated file that contains a number of statistics for each region including read counts, number of read modifications, nucleotide specific read modifications, and strand and length specific read counts.
* TotalReads.dat : Lists the total number of reads mapped to the genome (given by parameter -i and excluding reads that may have mapped to the contamination file)
* Other associated files used for calculation and reporting.
* alignedReads.sub.compact has the compact information of aligned reads. If intermediate files are not removed, aligned BAM files will be present.
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