Move from GitHub (#33)

* Move from github: add coveralls to requirements-dev

* Fix typos

* Add macos to CI, add coveralls

* Update links/badges

.coveralls.yml

@@ -0,0 +1 @@
+repo_token: 5onYy27mPi7cCRUIQrlPNnnHdAe7jnIGh

.github/workflows/ci.yml

@@ -8,7 +8,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        os: [ubuntu-latest, windows-latest]
+        os: [ubuntu-latest, windows-latest, macos-latest]
         python-ver: [3.6, 3.7]
         experimental: [false]
         include:
@@ -18,6 +18,9 @@ jobs:
           - python-ver: 3.8
             os: windows-latest
             experimental: true
+          - python-ver: 3.8
+            os: macos-latest
+            experimental: true
 
     runs-on: ${{ matrix.os }}
     continue-on-error: ${{ matrix.experimental }}
@@ -59,19 +62,19 @@ jobs:
           export DISPLAY=":1"
           export LD_LIBRARY_PATH=$pythonLocation"/lib/python3.6/site-packages/PySide2/Qt/plugins/platfoms"
           coverage erase
-          coverage run -a --source ./sksurgeryvtk -m pytest
+          coverage run -a --source ./sksurgeryutils -m pytest
           coverage report -m
 
       - name: Run tests Windows/Mac
         if: contains(matrix.os, 'o')
         run: |
           coverage erase
-          coverage run -a --source ./sksurgeryvtk -m pytest
+          coverage run -a --source ./sksurgeryutils -m pytest
           coverage report -m
 
       - name: Linting
         run: |
-          pylint --rcfile=tests/pylintrc sksurgeryvtk
+          pylint --rcfile=tests/pylintrc sksurgeryutils
 
       - name: Run coveralls
         run: |

CONTRIBUTING.rst

@@ -10,7 +10,7 @@ We welcome contributions to scikit-surgeryutils.
 Reporting bugs and feature requests
 -----------------------------------
 
-Please create a new issue on https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgeryutils/issues/new
+Please create a new issue on https://github.com/UCL/scikit-surgeryutils/issues/new
 
 When reporting a bug, please include:
 * The version of scikit-surgeryutils you are using
@@ -23,13 +23,13 @@ Fixing bugs or implement features
 
 The easiest way to contribute is to follow these guidelines:
 
-1. Look through the issues on https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgeryutils/issues and assign the relevant issue to yourself. If there is not an existing issue that covers your work, please create one: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgeryutils/issues/new
+1. Look through the issues on https://github.com/UCL/scikit-surgeryutils/issues and assign the relevant issue to yourself. If there is not an existing issue that covers your work, please create one: https://github.com/UCL/scikit-surgeryutils/issues/new
 2. Read the design considerations below.
-3. Fork the repository: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgeryutils/forks/new
+3. Fork the repository: https://github.com/UCL/scikit-surgeryutils/forks/new
 4. Create a branch for your changes. The branch name should start with the issue number, followed by hyphen separated words describing the issue. For example: 1-update-contribution-guidelines
 5. Make your changes following the coding guidelines below.
 6. Commit and push your changes to your fork. The commit message should start with `Issue #<issue number>`, for example: "Issue #1: Fixed typo". Commit in small, related chunks. Review each commit and explain its purpose in the commit message.
-7. Submit a merge request: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgeryutils/merge_requests/new
+7. Submit a merge request: https://github.com/UCL/scikit-surgeryutils/merge_requests/new
 
 Design Considerations
 ---------------------

README.rst

@@ -1,21 +1,22 @@
 scikit-surgeryutils
 ===============================
 
-.. image:: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgeryutils/raw/master/project-icon.png
+.. image:: https://github.com/UCL/scikit-surgeryutils /raw/master/project-icon.png
    :height: 128px
    :width: 128px
-   :target: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgeryutils
+   :target: https://github.com/UCL/scikit-surgeryutils 
+   :alt: Logo
 
-.. image:: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgeryutils/badges/master/pipeline.svg
-   :target: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgeryutils/pipelines
-   :alt: GitLab-CI test status
+.. image:: https://github.com/UCL/scikit-surgeryutils/workflows/.github/workflows/ci.yml/badge.svg
+   :target: https://github.com/UCL/scikit-surgeryutils/actions
+   :alt: GitHub Actions CI statuss
 
-.. image:: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgeryutils/badges/master/coverage.svg
-    :target: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgeryutils/commits/master
+.. image:: https://coveralls.io/repos/github/UCL/scikit-surgeryutils/badge.svg?branch=master&service=github
+    :target: https://coveralls.io/github/UCL/scikit-surgeryutils?branch=master
     :alt: Test coverage
 
-.. image:: https://readthedocs.org/projects/scikit-surgeryutils/badge/?version=latest
-    :target: http://scikit-surgeryutils.readthedocs.io/en/latest/?badge=latest
+.. image:: https://readthedocs.org/projects/scikit-surgeryutils /badge/?version=latest
+    :target: http://scikit-surgeryutils .readthedocs.io/en/latest/?badge=latest
     :alt: Documentation Status
 
 scikit-surgeryutils is a python project containing small demo apps,
@@ -36,7 +37,7 @@ You can pip install directly from the repository as follows:
 
 ::
 
-    pip install git+https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgeryutils
+    pip install git+https://github.com/UCL/scikit-surgeryutils
 
 
 Developing
@@ -49,7 +50,7 @@ You can clone the repository using the following command:
 
 ::
 
-    git clone https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgeryutils
+    git clone https://github.com/UCL/scikit-surgeryutils
 
 
 Running the tests
@@ -93,12 +94,12 @@ Supported by `Wellcome`_ and `EPSRC`_.
 
 
 .. _`Wellcome EPSRC Centre for Interventional and Surgical Sciences`: http://www.ucl.ac.uk/weiss
-.. _`source code repository`: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgeryutils
+.. _`source code repository`: https://github.com/UCL/scikit-surgeryutils
 .. _`Documentation`: https://scikit-surgeryutils.readthedocs.io
 .. _`SNAPPY`: https://weisslab.cs.ucl.ac.uk/WEISS/PlatformManagement/SNAPPY/wikis/home
 .. _`University College London (UCL)`: http://www.ucl.ac.uk/
 .. _`Wellcome`: https://wellcome.ac.uk/
 .. _`EPSRC`: https://www.epsrc.ac.uk/
-.. _`contributing guidelines`: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgeryutils/blob/master/CONTRIBUTING.rst
-.. _`license file`: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgeryutils/blob/master/LICENSE
+.. _`contributing guidelines`: https://github.com/UCL/scikit-surgeryutils/blob/master/CONTRIBUTING.rst
+.. _`license file`: https://github.com/UCL/scikit-surgeryutils/blob/master/LICENSE
 .. _`common issues`: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgery/wikis/Common-Issues

requirements-dev.txt

@@ -15,3 +15,5 @@ pyinstaller
 pytest
 pytest-qt
 tox
+coveralls
+pyyaml

setup.py

@@ -17,7 +17,7 @@
     description='scikit-surgeryutils - Tests/demos utilities, based around opencv-contrib and PySide2',
     long_description=long_description,
     long_description_content_type='text/x-rst',
-    url='https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgeryutils',
+    url='https://github.com/UCL/scikit-surgeryutils',
     author='Matt Clarkson',
     author_email='m.clarkson@ucl.ac.uk',
     license='BSD-3 license',