re-generate latexify tests

SciML · Apr 21, 2021 · b7b78b2 · b7b78b2
1 parent b3aae31
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diff --git a/test/latexify.jl b/test/latexify.jl
@@ -38,11 +38,11 @@ end v1 K1 n1 v2 K2 n2 v3 K3 n3 v4 K4 n4 v5 K5 n5 k1 k2 k3 k4 k5 k6 d1 d2 d3 d4 d
 @test latexify(r) == replace(
 raw"\begin{align}
 \require{mhchem}
-\ce{ \varnothing &->[K1^{n1} v1^{2} \left( \mathrm{X4}\left( t \right) \right)^{n1} \mathrm{inv}\left( K1^{n1} + \left( \mathrm{X2}\left( t \right) \right)^{n1} \right) \mathrm{inv}\left( K1^{n1} + \left( \mathrm{X4}\left( t \right) \right)^{n1} \right)] X1}\\
-\ce{ \varnothing &->[v2 \left( \mathrm{X5}\left( t \right) \right)^{n2} \mathrm{inv}\left( K2^{n2} + \left( \mathrm{X5}\left( t \right) \right)^{n2} \right)] X2}\\
-\ce{ \varnothing &->[v3 \left( \mathrm{X3}\left( t \right) \right)^{n3} \mathrm{inv}\left( K3^{n3} + \left( \mathrm{X3}\left( t \right) \right)^{n3} \right)] X3}\\
-\ce{ \varnothing &->[v4 K4^{n4} \mathrm{inv}\left( K4^{n4} + \left( \mathrm{X1}\left( t \right) \right)^{n4} \right)] X4}\\
-\ce{ \varnothing &->[v5 \left( \mathrm{X2}\left( t \right) \right)^{n5} \mathrm{inv}\left( K5^{n5} + \left( \mathrm{X2}\left( t \right) \right)^{n5} \right)] X5}\\
+\ce{ \varnothing &->[\frac{v1 \left( \mathrm{X4}\left( t \right) \right)^{n1}}{K1^{n1} + \left( \mathrm{X4}\left( t \right) \right)^{n1}} \frac{v1 K1^{n1}}{K1^{n1} + \left( \mathrm{X2}\left( t \right) \right)^{n1}}] X1}\\
+\ce{ \varnothing &->[\frac{v2 \left( \mathrm{X5}\left( t \right) \right)^{n2}}{K2^{n2} + \left( \mathrm{X5}\left( t \right) \right)^{n2}}] X2}\\
+\ce{ \varnothing &->[\frac{v3 \left( \mathrm{X3}\left( t \right) \right)^{n3}}{K3^{n3} + \left( \mathrm{X3}\left( t \right) \right)^{n3}}] X3}\\
+\ce{ \varnothing &->[\frac{v4 K4^{n4}}{K4^{n4} + \left( \mathrm{X1}\left( t \right) \right)^{n4}}] X4}\\
+\ce{ \varnothing &->[\frac{v5 \left( \mathrm{X2}\left( t \right) \right)^{n5}}{K5^{n5} + \left( \mathrm{X2}\left( t \right) \right)^{n5}}] X5}\\
 \ce{ X2 &<=>[k1][k2] X1 + 2 X4}\\
 \ce{ X4 &<=>[k3][k4] X3}\\
 \ce{ 3 X5 + X1 &<=>[k5][k6] X2}\\
@@ -54,14 +54,15 @@ raw"\begin{align}
 \end{align}
 ", "\r\n"=>"\n")
 
+
 # Latexify.@generate_test latexify(r, mathjax=false)
 @test latexify(r, mathjax = false) == replace(
 raw"\begin{align}
-\ce{ \varnothing &->[$K1^{n1} v1^{2} \left( \mathrm{X4}\left( t \right) \right)^{n1} \mathrm{inv}\left( K1^{n1} + \left( \mathrm{X2}\left( t \right) \right)^{n1} \right) \mathrm{inv}\left( K1^{n1} + \left( \mathrm{X4}\left( t \right) \right)^{n1} \right)$] X1}\\
-\ce{ \varnothing &->[$v2 \left( \mathrm{X5}\left( t \right) \right)^{n2} \mathrm{inv}\left( K2^{n2} + \left( \mathrm{X5}\left( t \right) \right)^{n2} \right)$] X2}\\
-\ce{ \varnothing &->[$v3 \left( \mathrm{X3}\left( t \right) \right)^{n3} \mathrm{inv}\left( K3^{n3} + \left( \mathrm{X3}\left( t \right) \right)^{n3} \right)$] X3}\\
-\ce{ \varnothing &->[$v4 K4^{n4} \mathrm{inv}\left( K4^{n4} + \left( \mathrm{X1}\left( t \right) \right)^{n4} \right)$] X4}\\
-\ce{ \varnothing &->[$v5 \left( \mathrm{X2}\left( t \right) \right)^{n5} \mathrm{inv}\left( K5^{n5} + \left( \mathrm{X2}\left( t \right) \right)^{n5} \right)$] X5}\\
+\ce{ \varnothing &->[$\frac{v1 \left( \mathrm{X4}\left( t \right) \right)^{n1}}{K1^{n1} + \left( \mathrm{X4}\left( t \right) \right)^{n1}} \frac{v1 K1^{n1}}{K1^{n1} + \left( \mathrm{X2}\left( t \right) \right)^{n1}}$] X1}\\
+\ce{ \varnothing &->[$\frac{v2 \left( \mathrm{X5}\left( t \right) \right)^{n2}}{K2^{n2} + \left( \mathrm{X5}\left( t \right) \right)^{n2}}$] X2}\\
+\ce{ \varnothing &->[$\frac{v3 \left( \mathrm{X3}\left( t \right) \right)^{n3}}{K3^{n3} + \left( \mathrm{X3}\left( t \right) \right)^{n3}}$] X3}\\
+\ce{ \varnothing &->[$\frac{v4 K4^{n4}}{K4^{n4} + \left( \mathrm{X1}\left( t \right) \right)^{n4}}$] X4}\\
+\ce{ \varnothing &->[$\frac{v5 \left( \mathrm{X2}\left( t \right) \right)^{n5}}{K5^{n5} + \left( \mathrm{X2}\left( t \right) \right)^{n5}}$] X5}\\
 \ce{ X2 &<=>[$k1$][$k2$] X1 + 2 X4}\\
 \ce{ X4 &<=>[$k3$][$k4$] X3}\\
 \ce{ 3 X5 + X1 &<=>[$k5$][$k6$] X2}\\
@@ -74,6 +75,7 @@ raw"\begin{align}
 ", "\r\n"=>"\n")
 
 
+
 r = @reaction_network begin
     (hill(B, p_a, k, n), d_a), 0 ↔ A
     (p_b, d_b), 0 ↔ B
@@ -84,7 +86,7 @@ end p_a k n d_a p_b d_b r_a r_b
 @test latexify(r) == replace(
 raw"\begin{align}
 \require{mhchem}
-\ce{ \varnothing &<=>[p_{a} \left( B\left( t \right) \right)^{n} \mathrm{inv}\left( k^{n} + \left( B\left( t \right) \right)^{n} \right)][d_{a}] A}\\
+\ce{ \varnothing &<=>[\frac{p_{a} \left( B\left( t \right) \right)^{n}}{k^{n} + \left( B\left( t \right) \right)^{n}}][d_{a}] A}\\
 \ce{ \varnothing &<=>[p_{b}][d_{b}] B}\\
 \ce{ 3 B &<=>[r_{a}][r_{b}] A}
 \end{align}
@@ -93,7 +95,7 @@ raw"\begin{align}
 # Latexify.@generate_test latexify(r, mathjax=false)
 @test latexify(r, mathjax = false) == replace(
 raw"\begin{align}
-\ce{ \varnothing &<=>[$p_{a} \left( B\left( t \right) \right)^{n} \mathrm{inv}\left( k^{n} + \left( B\left( t \right) \right)^{n} \right)$][$d_{a}$] A}\\
+\ce{ \varnothing &<=>[$\frac{p_{a} \left( B\left( t \right) \right)^{n}}{k^{n} + \left( B\left( t \right) \right)^{n}}$][$d_{a}$] A}\\
 \ce{ \varnothing &<=>[$p_{b}$][$d_{b}$] B}\\
 \ce{ 3 B &<=>[$r_{a}$][$r_{b}$] A}
 \end{align}

diff --git a/test/runtests.jl b/test/runtests.jl
@@ -32,7 +32,7 @@ end
 
 # Miscellaneous tests
 #@time @safetestset "Basic Plotting" begin include("plotting.jl") end
-#@time @safetestset "Latexify" begin include("latexify.jl") end
+@time @safetestset "Latexify" begin include("latexify.jl") end
 @time @safetestset "Graphs" begin include("graphs.jl") end
 
 end # @time