fix tests

SciML · Aug 31, 2021 · f3f7eb8 · f3f7eb8
1 parent 218bf11
commit f3f7eb8
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Showing 2 changed files with 9 additions and 7 deletions.
diff --git a/src/networkapi.jl b/src/networkapi.jl
@@ -165,7 +165,7 @@ function substoichmat(::Type{Matrix{Int}},rn::ReactionSystem; smap=speciesmap(rn
     end
     smat
 end
-function substoichmat(rn::ReactionSystem; sparse::Bool=false; smap=speciesmap(rn))
+function substoichmat(rn::ReactionSystem; sparse::Bool=false, smap=speciesmap(rn))
 	sparse ? substoichmat(SparseMatrixCSC{Int,Int}, rn; smap=smap) : substoichmat(Matrix{Int}, rn; smap=smap)
 end
 
@@ -179,7 +179,7 @@ coefficient of the ith product within the jth reaction.
 Note:
 - Set sparse=true for a sparse matrix representation
 """
-function prodstoichmat(::Type{SparseMatrixCSC{Int}}, rn::ReactionSystem; smap=speciesmap(rn))
+function prodstoichmat(::Type{SparseMatrixCSC{Int,Int}}, rn::ReactionSystem; smap=speciesmap(rn))
     Is=Int[];  Js=Int[];  Vs=Int[];
     for (k,rx) in enumerate(reactions(rn))
         stoich = rx.prodstoich
@@ -360,7 +360,7 @@ function reactioncomplexes(::Type{Matrix{Int}},rn::ReactionSystem;
     end
     complexes,B
 end
-function reactioncomplexes(rn::ReactionSystem; sparse=false; smap=speciesmap(rn))
+function reactioncomplexes(rn::ReactionSystem; sparse=false, smap=speciesmap(rn))
 	sparse ? reactioncomplexes(SparseMatrixCSC{Int,Int}, rn; smap=smap) : reactioncomplexes(Matrix{Int}, rn; smap=smap)
 end
 

diff --git a/test/api.jl b/test/api.jl
@@ -73,10 +73,12 @@ rnmat = @reaction_network begin
        β, 3I --> 2R + S
    end α β
 
-smat = [1 2 0;
-        0 3 0]
-pmat = [0 2 0;
-        1 0 2]
+smat = [1 0;
+        2 3;
+        0 0]
+pmat = [0 1;
+        2 0;
+        0 2]
 @test smat == substoichmat(rnmat) == Matrix(substoichmat(rnmat, sparse=true))
 @test pmat == prodstoichmat(rnmat) == Matrix(prodstoichmat(rnmat, sparse=true))