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Lazy W operator support #443

Merged
merged 43 commits into from
Jul 29, 2018
Merged

Lazy W operator support #443

merged 43 commits into from
Jul 29, 2018

Commits on Jul 19, 2018

  1. WOperator and test

    @MSeeker1340
    MSeeker1340 committed Jul 19, 2018
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Commits on Jul 20, 2018

  1. Merge remote-tracking branch 'origin/master' into lazy-W

    @MSeeker1340
    MSeeker1340 committed Jul 20, 2018
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  2. Adjust position for WOperator

    @MSeeker1340
    MSeeker1340 committed Jul 20, 2018
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  3. Update calc_W! for constant cache

    @MSeeker1340
    MSeeker1340 committed Jul 20, 2018
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  4. Scalar WOperator compatibility

    @MSeeker1340
    MSeeker1340 committed Jul 20, 2018
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  5. Mass matrix for finite differece calc_W!

    @MSeeker1340
    MSeeker1340 committed Jul 20, 2018
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  6. Fix non-scalar adaptive ImplicitEuler

    @MSeeker1340
    MSeeker1340 committed Jul 20, 2018
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  7. Merge remote-tracking branch 'origin/master' into lazy-W

    @MSeeker1340
    MSeeker1340 committed Jul 20, 2018
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  8. Support transformed W

    @MSeeker1340
    MSeeker1340 committed Jul 20, 2018
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  9. Merge remote-tracking branch 'origin/master' into lazy-W

    @MSeeker1340
    MSeeker1340 committed Jul 20, 2018
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Commits on Jul 22, 2018

  1. Merge remote-tracking branch 'origin/master' into lazy-W

    @MSeeker1340
    MSeeker1340 committed Jul 22, 2018
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  2. Add constructor with uninitiated mass_matrix

    @MSeeker1340
    MSeeker1340 committed Jul 22, 2018
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  3. Add WOperator support to in-place calc_W!

    @MSeeker1340
    MSeeker1340 committed Jul 22, 2018
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  4. Update J and W allocation for ImplicitEulerCache

    @MSeeker1340
    MSeeker1340 committed Jul 22, 2018
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Commits on Jul 24, 2018

  1. Use mass_matrix from ODEFunction

    @MSeeker1340
    MSeeker1340 committed Jul 24, 2018
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  2. Merge remote-tracking branch 'origin/master' into lazy-W

    @MSeeker1340
    MSeeker1340 committed Jul 24, 2018
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Commits on Jul 25, 2018

  1. Merge remote-tracking branch 'origin/master' into lazy-W

    @MSeeker1340
    MSeeker1340 committed Jul 25, 2018
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  2. Safer lazy W predicate 

    Instead of inquiring about `f.jac_prototype` directly (which may not exist), a predicate function `lazy_W` is used for `calc_W!` and `alg_cache`.
    @MSeeker1340
    MSeeker1340 committed Jul 25, 2018
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  3. Non-allocating convert method

    @MSeeker1340
    MSeeker1340 committed Jul 25, 2018
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  4. Use lazy cache for mul!

    @MSeeker1340
    MSeeker1340 committed Jul 25, 2018
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Commits on Jul 26, 2018

  1. Bugfix

    @MSeeker1340
    MSeeker1340 committed Jul 26, 2018
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  2. Remove lazy_W and always use WOperator

    @MSeeker1340
    MSeeker1340 committed Jul 26, 2018
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  3. Constructor using f 

    Also drops `calc_J!` and uses `update_coefficient!` instead.
    @MSeeker1340
    MSeeker1340 committed Jul 26, 2018
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  4. W_transform consistency

    @MSeeker1340
    MSeeker1340 committed Jul 26, 2018
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  5. Update test script

    @MSeeker1340
    MSeeker1340 committed Jul 26, 2018
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  6. Improve handling of out-of-place jacobian 

    Switched back to old constructor in out-of-place `calc_W!` to better handle jacobian given by `jac(u,p,t) -> J`
    @MSeeker1340
    MSeeker1340 committed Jul 26, 2018
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Commits on Jul 28, 2018

  1. Merge remote-tracking branch 'origin/master' into lazy-W

    @MSeeker1340
    MSeeker1340 committed Jul 28, 2018
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  2. Update sdirk methods

    @MSeeker1340
    MSeeker1340 committed Jul 28, 2018
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  3. Update ABM methods

    @MSeeker1340
    MSeeker1340 committed Jul 28, 2018
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  4. Update bdf methods

    @MSeeker1340
    MSeeker1340 committed Jul 28, 2018
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  5. Update EulerIMEX

    @MSeeker1340
    MSeeker1340 committed Jul 28, 2018
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  6. Update Kencarp Kvaerno methods

    @MSeeker1340
    MSeeker1340 committed Jul 28, 2018
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  7. Update Rosenbrock methods

    @MSeeker1340
    MSeeker1340 committed Jul 28, 2018
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Commits on Jul 29, 2018

  1. Add back concrete W for functions without jac 

    The previously removed concrete W calculation section in `calc_W!` is needed for problems whose function does not have a jacobian but instead calculates it via forward diff/finite difference using `calc_J!`
    @MSeeker1340
    MSeeker1340 committed Jul 29, 2018
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  2. Bugfix

    @MSeeker1340
    MSeeker1340 committed Jul 29, 2018
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  3. Fix invW 

    Building lazy W conflicts with how a *DEFunction with `invW` is handled in `calc_W!`. Thus the cache building criteria in `alg_cache` is changed accordingly.
    @MSeeker1340
    MSeeker1340 committed Jul 29, 2018
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  4. Fix differentiation traits tests

    @MSeeker1340
    MSeeker1340 committed Jul 29, 2018
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  5. Fix test scripts 

    1. Fix global `fun` being polluted by complex_tests.jl
2. Add Compat to REQUIRE (used by iterator_tests.jl)
    @MSeeker1340
    MSeeker1340 committed Jul 29, 2018
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  6. Address jac_prototype=nothing case

    @MSeeker1340
    MSeeker1340 committed Jul 29, 2018
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  7. Merge remote-tracking branch 'origin/master' into lazy-W

    @MSeeker1340
    MSeeker1340 committed Jul 29, 2018
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  8. Integration test

    @MSeeker1340
    MSeeker1340 committed Jul 29, 2018
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  9. Update REQUIRE

    @ChrisRackauckas
    ChrisRackauckas committed Jul 29, 2018
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  10. Update utility_tests.jl

    @ChrisRackauckas
    ChrisRackauckas committed Jul 29, 2018
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