Merge pull request #1146 from ScilifelabDataCentre/accessibility_3

Accessibility fix 3

content/english/about/_index.md

@@ -39,27 +39,27 @@ The team are happy to help with using the Portal, to take suggestions regarding
 <div class="container mb-3">
   <div class="row row-cols-2 row-cols-md-3 row-cols-lg-6">
     <div class="col pt-2">
-      <div><img src="/img/people/lh.jpg" width="150" class="img-thumbnail"/></div>
+      <div><img src="/img/people/lh.jpg" alt="Picute of Liane H" width="150" class="img-thumbnail"/></div>
       <div><b>Liane Hughes</b></div>
       <div><span class="text-muted">Project leader</span></div>
     </div>
     <div class="col pt-2">
-      <div><img src="/img/people/kos.jpg" width="150" class="img-thumbnail"/></div>
+      <div><img src="/img/people/kos.jpg" alt="Picute of Katarina ÖS" width="150" class="img-thumbnail"/></div>
       <div><b>Katarina Öjefors Stark</b></div>
       <div><span class="text-muted">Data steward</span></div>
     </div>
     <div class="col pt-2">
-      <div><img src="/img/people/sp.jpg" width="150" class="img-thumbnail"/></div>
+      <div><img src="/img/people/sp.jpg" alt="Picute of Senthilkumar P" width="150" class="img-thumbnail"/></div>
       <div><b>Senthilkumar Panneerselvam</b></div>
       <div><span class="text-muted">Systems developer</span></div>
     </div>
     <div class="col pt-2">
-      <div><img src="/img/people/hk.jpg" width="150" class="img-thumbnail"/></div>
+      <div><img src="/img/people/hk.jpg" alt="Picute of Hanna K" width="150" class="img-thumbnail"/></div>
       <div><b>Hanna Kultima</b></div>
       <div><span class="text-muted">Vice head of SciLifeLab Data Centre</span></div>
     </div>
     <div class="col pt-2">
-      <div><img src="/img/people/jr.jpg" width="150" class="img-thumbnail"/></div>
+      <div><img src="/img/people/jr.jpg" alt="Picute of Johan R" width="150" class="img-thumbnail"/></div>
       <div><b>Johan Rung</b></div>
       <div><span class="text-muted">Head of SciLifeLab Data Centre</span></div>
     </div>

content/english/about/organisations_and_programs.md

@@ -25,7 +25,7 @@ layout: about_navbar
 <div class="row mt-4">
   <div class="col-12 col-md-4 col-lg-3 d-none d-md-block">
     <figure class="figure">
-      <img width="250" src="/img/logos/scilifelab_kaw_logo.png">
+      <img width="250" alt="KAW logo" src="/img/logos/scilifelab_kaw_logo.png">
     </figure>
   </div>
   <div class="col-12 col-md-8 col-lg-9">
@@ -38,7 +38,7 @@ layout: about_navbar
 <div class="row mt-4">
   <div class="col-12 col-md-4 col-lg-3 d-none d-md-block">
     <figure class="figure">
-      <img width="250" src="/img/logos/scilifelab-logo.svg">
+      <img width="250" alt="Scilifelab logo" src="/img/logos/scilifelab-logo.svg">
     </figure>
   </div>
   <div class="col-12 col-md-8 col-lg-9">

content/english/about/partner_organisations.md

@@ -10,7 +10,7 @@ layout: about_navbar
 <div class="row">
   <div class="col-12 col-md-4 col-lg-3 d-none d-md-block">
     <figure class="figure">
-      <img height="50" alt="The European COVID-19 Data Platform logo" src="/img/site_logo/eml_pathogens_logo.svg">
+      <img height="50" alt="The European pathogens portal logo" src="/img/site_logo/eml_pathogens_logo.svg">
     </figure>
   </div>
   <div class="col-12 col-md-8 col-lg-9">

content/english/data-management.md

@@ -14,11 +14,11 @@ On this page, you will find information about where to access direct, one-on-one
 
 ### Swedish Pathogens Portal
 
-Whilst the portal contains many general guidelines for RDM e.g. how to [share data](/share-data/), we also offer direct support for individual projects. To access this, please send an email to <a href="mailto:pathogens@scilifelab.se">pathogens@scilifelab.se</a> or send a messsage via the [contact form](/contact/). You can typically expect a response within one working day.
+Whilst the portal contains many general guidelines for RDM e.g. how to [share data](/share-data/), we also offer direct support for individual projects. To access this, please send an email to [pathogens@scilifelab.se](mailto:pathogens@scilifelab.se) or send a messsage via the [contact form](/contact/). You can typically expect a response within one working day.
 
 ### SciLifeLab Data Management Helpdesk
 
-The SciLifeLab Data Management Helpdesk is operated by experts in RDM from the SciLifeLab Data Centre and National Bioinformatics Infrastructure Sweden (NBIS). The purpose of the helpdesk is to provide direct, customised RDM support for those working in life science research in Sweden. To get in touch, send an email to <a href="mailto:data-management@scilifelab.se">data-management@scilifelab.se</a>. Alternatively, you can go to the [SciLifeLab Research Data Management Guidelines](https://data-guidelines.scilifelab.se) and submit questions via the contact form.
+The SciLifeLab Data Management Helpdesk is operated by experts in RDM from the SciLifeLab Data Centre and National Bioinformatics Infrastructure Sweden (NBIS). The purpose of the helpdesk is to provide direct, customised RDM support for those working in life science research in Sweden. To get in touch, send an email to [data-management@scilifelab.se](mailto:data-management@scilifelab.se). Alternatively, you can go to the [SciLifeLab Research Data Management Guidelines](https://data-guidelines.scilifelab.se) and submit questions via the contact form.
 
 ## Resources for infectious disease data
 

content/english/highlights/antibiotic_resistance_development.md

@@ -7,7 +7,7 @@ banner_large: /highlights/banners/antibiotic_resistance_development.jpg
 banner_caption: Artistic illustration of perseverance courtesy Elf lab / Johan Elf, Irmeli Barkefors
 highlights_topics: [Antibiotic resistance]
 tags: [Antibiotic resistance, Bacteria, Escherichia coli, Perseverance, Time-lapse microscopy]
-announcement: "This data highlight was also [published on the SciLifeLab Data Platform](https://data.scilifelab.se/highlights/antibiotic_resistance_development/), as the work described in this highlight constitutes data-driven life science. The Platform is a hub for data-driven life science in Sweden, containing multiple relevant resources, tools, and services. It includes information on multiple subjects, including infectious diseases, please check out the [Data Platform](https://data.scilifelab.se/) for more."
+announcement: "This data highlight was also <a class='dark-blue' target='_blank' href='https://data.scilifelab.se/highlights/antibiotic_resistance_development/'>published on the SciLifeLab Data Platform</a>, as the work described in this highlight constitutes data-driven life science. The Platform is a hub for data-driven life science in Sweden, containing multiple relevant resources, tools, and services. It includes information on multiple subjects, including infectious diseases, please check out the <a class='dark-blue' target='_blank' href='https://data.scilifelab.se/'>Data Platform</a> for more."
 images: [/highlights/banners/antibiotic_resistance_development_small.jpg]
 ---
 

content/english/highlights/bacterial_replication.md

@@ -7,7 +7,7 @@ banner_large: /highlights/banners/ELF_large.png
 banner_caption: Image courtesy Johan Elf lab
 highlights_topics: [Infectious Diseases]
 tags: [Infectious diseasese, Replication, Escherichia coli]
-announcement: "This data highlight was also [published on the SciLifeLab Data Platform](https://data.scilifelab.se/highlights/bacterial_replication/), as the work described in this highlight constitutes data-driven life science. The Platform is a hub for data-driven life science in Sweden, containing multiple relevant resources, tools, and services. It includes information on multiple subjects, including infectious diseases, please check out the [Data Platform](https://data.scilifelab.se/) for more."
+announcement: "This data highlight was also <a class='dark-blue' target='_blank' href='https://data.scilifelab.se/highlights/bacterial_replication/'>published on the SciLifeLab Data Platform</a>, as the work described in this highlight constitutes data-driven life science. The Platform is a hub for data-driven life science in Sweden, containing multiple relevant resources, tools, and services. It includes information on multiple subjects, including infectious diseases, please check out the <a class='dark-blue' target='_blank' href='https://data.scilifelab.se/'>Data Platform</a> for more."
 images: [/highlights/banners/ELF_banner.png]
 ---
 

content/english/highlights/covimapp.md

@@ -21,7 +21,7 @@ tags:
     SARS-CoV-2,
   ]
 authors: [Katarina Öjefors Stark]
-announcement: "This data highlight was also published on the <a target='_blank' href='https://data.scilifelab.se/highlights/covimapp/'>SciLifeLab Data Platform</a>, as the work described in this highlight constitutes data-driven life science. The Platform is a hub for data-driven life science in Sweden, containing multiple relevant resources, tools, and services. It includes information on multiple subjects, including infectious diseases, please check out the <a target='_blank' href='https://data.scilifelab.se/'>Data Platform</a> for more."
+announcement: "This data highlight was also published on the <a class='dark-blue' target='_blank' href='https://data.scilifelab.se/highlights/covimapp/'>SciLifeLab Data Platform</a>, as the work described in this highlight constitutes data-driven life science. The Platform is a hub for data-driven life science in Sweden, containing multiple relevant resources, tools, and services. It includes information on multiple subjects, including infectious diseases, please check out the <a class='dark-blue' target='_blank' href='https://data.scilifelab.se/'>Data Platform</a> for more."
 images: [/highlights/banners/covimapp_logo.png"]
 ---
 

content/english/highlights/igh_antibody_genes.md

@@ -7,7 +7,7 @@ banner_large: /highlights/banners/igh_antibody_genes.jpg
 banner_caption: Graphical abstract (Image courtesy Pushparaj et al. 2023)
 highlights_topics: [COVID-19, Infectious Diseases]
 tags: [SARS-CoV-2, Genotyping, Haplotype analysis, Cryo-EM, IGHV1-69, Variability, Individual response, Infection]
-announcement: "This data highlight was also [published on the SciLifeLab Data Platform](https://data.scilifelab.se/highlights/igh_antibody_genes/), as the work described in this highlight constitutes data-driven life science. The Platform is a hub for data-driven life science in Sweden, containing multiple relevant resources, tools, and services. It includes information on multiple subjects, including infectious diseases, please check out the [Data Platform](https://data.scilifelab.se/) for more."
+announcement: "This data highlight was also <a class='dark-blue' target='_blank' href='https://data.scilifelab.se/highlights/igh_antibody_genes/'>published on the SciLifeLab Data Platform</a>, as the work described in this highlight constitutes data-driven life science. The Platform is a hub for data-driven life science in Sweden, containing multiple relevant resources, tools, and services. It includes information on multiple subjects, including infectious diseases, please check out the <a class='dark-blue' target='_blank' href='https://data.scilifelab.se/'>Data Platform</a> for more."
 images: [/highlights/banners/igh_antibody_genes_small.jpg]
 ---
 

content/english/highlights/mettl3_localisation.md

@@ -7,7 +7,7 @@ banner_large: /highlights/banners/mettl3_localisation.png
 banner_caption: Graphical abstract (Image courtesy Vaid and Mendez et al. (2023)).
 highlights_topics: [COVID-19, Infectious Diseases]
 tags: [Infectious diseases, COVID-19, gene expression, Antivirual strategy, METTL3, Antiviral, Pandemic Preparedness]
-announcement: "This data highlight was also [published on the SciLifeLab Data Platform](https://data.scilifelab.se/highlights/mettl3_localisation/), as the work described in this highlight constitutes data-driven life science. The Platform is a hub for data-driven life science in Sweden, containing multiple relevant resources, tools, and services. It includes information on multiple subjects, including infectious diseases, please check out the [Data Platform](https://data.scilifelab.se/) for more."
+announcement: "This data highlight was also <a class='dark-blue' target='_blank' href='https://data.scilifelab.se/highlights/mettl3_localisation/'>published on the SciLifeLab Data Platform</a>, as the work described in this highlight constitutes data-driven life science. The Platform is a hub for data-driven life science in Sweden, containing multiple relevant resources, tools, and services. It includes information on multiple subjects, including infectious diseases, please check out the <a class='dark-blue' target='_blank' href='https://data.scilifelab.se/'>Data Platform</a> for more."
 images: [/highlights/banners/mettl3_localisation_small.png]
 ---
 

content/english/highlights/poliovirus_replication.md

@@ -12,7 +12,7 @@ aliases:
     - /news/poliovirus_replication
     - /sv/news/poliovirus_replication
 images: ["/highlights/banners/segmentation_highReso.jpeg"]
-announcement: "This data highlight was also [published on the SciLifeLab Data Platform](https://data.scilifelab.se/highlights/poliovirus_replication/), as the work described in this highlight constitutes data-driven life science. The Platform is a hub for data-driven life science in Sweden, containing multiple relevant resources, tools, and services. It includes information on multiple subjects, including infectious diseases, please check out the [Data Platform](https://data.scilifelab.se/) for more."
+announcement: "This data highlight was also <a class='dark-blue' target='_blank' href='https://data.scilifelab.se/highlights/poliovirus_replication/'>published on the SciLifeLab Data Platform</a>, as the work described in this highlight constitutes data-driven life science. The Platform is a hub for data-driven life science in Sweden, containing multiple relevant resources, tools, and services. It includes information on multiple subjects, including infectious diseases, please check out the <a class='dark-blue' target='_blank' href='https://data.scilifelab.se/'>Data Platform</a> for more."
 images: [/highlights/banners/segmentation_highReso.jpeg]
 ---
 

content/english/highlights/sars-cov2_T-cell_response.md

@@ -22,7 +22,7 @@ In summary, the sensitivity and specificity of a FluoroSpot SARS-CoV-2 T-cell as
 
 <span style="background-color: #E0E0E0; padding: 10px; border-radius: 4px; display: block;">
     <h6>SciLifeLab/KAW National COVID-19 Research Program</h6>
-    The aim of the <a href="https://www.scilifelab.se/pandemic-response/covid-19-research-program/">SciLifeLab/KAW National COVID-19 research program</a> is to provide useful knowledge about the current situation during the corona pandemic and also to provide knowledge for future pandemics. In addition, the program aims to improve preventions, diagnostics and treatments of viral disease, a clearer real-time overview of the pandemic, integrate data across technologies, and research domains, and create better predictive models. This research program is made possible by funding from <a href="https://kaw.wallenberg.org/en">Knut and Alice Wallenberg Foundation</a> (KAW). More about the COVID-19 efforts funded by KAW <a href="https://kaw.wallenberg.org/en/foundations-efforts-against-corona-virus">here</a>.
+    The aim of the <a class="dark-blue" href="https://www.scilifelab.se/pandemic-response/covid-19-research-program/">SciLifeLab/KAW National COVID-19 research program</a> is to provide useful knowledge about the current situation during the corona pandemic and also to provide knowledge for future pandemics. In addition, the program aims to improve preventions, diagnostics and treatments of viral disease, a clearer real-time overview of the pandemic, integrate data across technologies, and research domains, and create better predictive models. This research program is made possible by funding from <a class="dark-blue" href="https://kaw.wallenberg.org/en">Knut and Alice Wallenberg Foundation</a> (KAW). More about the COVID-19 efforts funded by KAW <a class="dark-blue" href="https://kaw.wallenberg.org/en/foundations-efforts-against-corona-virus">here</a>.
 </span>
 
 #### Data

content/english/highlights/symptom-study-sweden.md

@@ -18,7 +18,7 @@ The global COVID-19 pandemic has increased challenges to healthcare, society and
 COVID Symptom Study Sweden is run by Lund University and Uppsala University in collaboration with King’s College London and Zoe Global Ltd (Swedish PIs: prof. Tove Fall, Uppsala University, and prof. Maria Gomez and prof. Paul Franks, Lund University). The project aims to map the spread of COVID-19 in Sweden as well as to increase knowledge about the effect of SARS-CoV-2 on human body. The first aim includes investigation of temporal and geographical trends in SARS-CoV-2 spread and investigations of how changes in national strategies affect the spread.
 
 <figure class="figure float-left mx-2 w-25">
-  <img src="/highlights/banners/csss_map.png" class="img-thumbnail">
+  <img alt="Symptoms case map image" src="/highlights/banners/csss_map.png" class="img-thumbnail">
   <figcaption class="figure-caption mt-1"><i>Estimated prevalence of symptomatic cases of COVID-19 in various counties in Sweden, as % of population. Estimates based on data reported by COVID Symptom Study App users, 29.03.2021.</i></figcaption>
 </figure>
 

content/english/pathogens/hepatitis_unknown_origin.md

@@ -22,7 +22,7 @@ The CDC is currently conducting research and working in close collaboration with
 
 ### Timeline of outbreak
 <br>
-<figure><img width="1000" src="/img/other/hepatitis_timeline.png"></figure>
+<figure><img alt="Image of Hepatitis outbreak timeline" width="1000" src="/img/other/hepatitis_timeline.png"></figure>
 
 ## Resources
 

content/english/pathogens/mpox.md

@@ -92,3 +92,21 @@ These tools have been adapted/developed for use with the mpox virus. They could
 - [Information from the Centers for Disease Control (CDC) in the USA](https://www.cdc.gov/poxvirus/monkeypox/index.html)
 - [ONA Mpox Outbreak Dashboard](https://onaghi.akuko.io/post/84cd71fb-9ce0-480a-8571-0e608a287849)
 - [Global map and case count](https://www.cdc.gov/poxvirus/monkeypox/response/2022/world-map.html) and [U.S. map and case count](https://www.cdc.gov/poxvirus/monkeypox/response/2022/us-map.html) for mpox in 2022 from the Centers for Disease Control (CDC)
+
+<script>
+  document.getElementById('originUrl_ann').value = location.href;
+  var form_ann = document.querySelector('.needs-validation-ann');
+  form_ann.addEventListener('submit', function(event){
+      if(form_ann.checkValidity() === false) {
+        event.preventDefault();
+        alert("Please fill out all required fields.");
+        event.stopPropagation();
+        form_ann.classList.add('was-validated')
+      }
+  })
+
+  // Add ARIA label for recaptcha
+  window.addEventListener("load", function () {
+    $('textarea#g-recaptcha-response').attr('aria-label', "The recaptcha response will appear here");
+  });
+</script>

content/english/resources/_index.md

@@ -11,5 +11,5 @@ This section of the Swedish Pathogens Portal is dedicted to capabilities related
 The pages for each capability are regularly updated with new information as it becomes available.
 
 <div class="alert alert-info">
-    <i class="bi bi-info-circle-fill"></i> To add or update information about pandemic preparedness capabilities, email us at <a href="mailto:pathogens@scilifelab.se">pathogens@scilifelab.se</a> or use our <a href="https://pathogens.se/contact/">contact form</a> to get in touch.
+    <i class="bi bi-info-circle-fill"></i> To add or update information about pandemic preparedness capabilities, email us at <a class="dark-blue" href="mailto:pathogens@scilifelab.se">pathogens@scilifelab.se</a> or use our <a class="dark-blue" href="https://pathogens.se/contact/">contact form</a> to get in touch.
 </div>

content/english/topics/mpox.md

@@ -15,7 +15,7 @@ aliases:
 
 <div class="alert alert-info">
   <i class="bi bi-exclamation-triangle-fill"></i>
-  <span>This page is under development, with more resources being added shortly. In the meantime, check out the <a href="/pathogens/mpox/">mpox page</a> in our 'emerging pathogens' section. That page contains more extensive information and useful links to other related resources.</span>
+  <span>This page is under development, with more resources being added shortly. In the meantime, check out the <a class="dark-blue" href="/pathogens/mpox/">mpox page</a> in our 'emerging pathogens' section. That page contains more extensive information and useful links to other related resources.</span>
 </div>
 
 ## Background