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@ShalekLab

ShalekLab

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  1. alexandria alexandria Public

    The Alexandria project aims to facilitate single-cell data analysis for users through providing an accessible data repository along with workflows, notebooks, and scripts

    Jupyter Notebook 9 3

  2. kallisto-bustools_workflow kallisto-bustools_workflow Public

    WDL 2

  3. Mead_et_al_NatBME_2021 Mead_et_al_NatBME_2021 Public

    Code and analyses for Mead et al Nature BME 2022

    R 2 1

  4. MIT_Milk_Study MIT_Milk_Study Public

    Jupyter Notebook 2

  5. compressed_screening compressed_screening Public

    Code for the manuscript: Compressed phenotypic screening empowers scalable biological discovery.

    Jupyter Notebook 2 1

  6. tcrgo tcrgo Public

    Identification and quantification of Seq-Well TCR transcripts and their recovered CDR3 sequences.

    Python 1 2

Repositories

Showing 10 of 17 repositories
  • HCA_Thailand_2024_workshop Public Forked from davidsebfischer/scRNAseq_workshop

    Computational workshop material for the HCA thailand training lives here

    ShalekLab/HCA_Thailand_2024_workshop’s past year of commit activity
    Jupyter Notebook 1 4 0 0 Updated Jun 27, 2024
  • compressed_screening Public

    Code for the manuscript: Compressed phenotypic screening empowers scalable biological discovery.

    ShalekLab/compressed_screening’s past year of commit activity
    Jupyter Notebook 2 1 0 0 Updated Apr 17, 2024
  • MultiOmics_SeqWellS3 Public

    Workflow scripts for data analyses of multi-omics data generated using Seq-Well S3

    ShalekLab/MultiOmics_SeqWellS3’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Jan 3, 2024
  • ShalekLab/mTB_CD8_Depletion’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Sep 28, 2023
  • Mead_et_al_NatBME_2021 Public

    Code and analyses for Mead et al Nature BME 2022

    ShalekLab/Mead_et_al_NatBME_2021’s past year of commit activity
    R 2 MIT 1 0 0 Updated May 23, 2022
  • ShalekLab/MIT_Milk_Study’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Mar 10, 2022
  • tcrgo Public

    Identification and quantification of Seq-Well TCR transcripts and their recovered CDR3 sequences.

    ShalekLab/tcrgo’s past year of commit activity
    Python 1 2 5 0 Updated Oct 13, 2021
  • alexandria Public

    The Alexandria project aims to facilitate single-cell data analysis for users through providing an accessible data repository along with workflows, notebooks, and scripts

    ShalekLab/alexandria’s past year of commit activity
    Jupyter Notebook 9 3 1 (1 issue needs help) 1 Updated Aug 24, 2021
  • SARSCoV2-genome-reference Public

    Edited SARS-CoV-2 genome fasta and gtf for Ziegler et al. 2021

    ShalekLab/SARSCoV2-genome-reference’s past year of commit activity
    1 0 0 0 Updated Feb 10, 2021
  • ShalekLab/ampliconBCR’s past year of commit activity
    WDL 0 MIT 1 1 0 Updated Nov 6, 2020

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