I have a problem when I used recycler

[OAF12]

This was the commad: python recycle.py -g assembly_graph.fastg -k 55 -b reads_pe_primary.sort.bam
but I got the below error
================== path, coverage levels when added ====================
Traceback (most recent call last):
File "recycle.py", line 131, in
last_node_count = len(COMP.nodes())
TypeError: object of type 'generator' has no len()
what should be done to solve this problem?
Thanks

[rozovr]

Hi @OAF12 ,

I apologize for taking very long to reply. Did you manage to resolve this issue? If not, can you help me replicate it?

Thanks, R

[OAF12]

?Hi, I didnt manage to solve the problem till now. How you can help me to solve it? Best regards Omneya

…

________________________________ From: Roye Rozov <notifications@github.com> Sent: Saturday, February 25, 2017 22:57 To: Shamir-Lab/Recycler Cc: Omneya Ahmed Abdel Hafez Sayed Osman; Mention Subject: Re: [Shamir-Lab/Recycler] I have a problem when I used recycler (#5) Hi @OAF12<https://github.com/OAF12> , I apologize for taking very long to reply. Did you manage to resolve this issue? If not, can you help me replicate it? Thanks, R - You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub<#5 (comment)>, or mute the thread<https://github.com/notifications/unsubscribe-auth/AXrXpnVnqWZ2o97S0oVf0zD_eYnAShY4ks5rgKO7gaJpZM4LXnxS>.

[rozovr]

Omneya,

Since I haven't seen this pop up before, I would suggest first ruling out installation issues. Can you please try to reinstall using bioconda? That should make sure all the dependencies are in place.

Thanks, R