package data fix

.github/workflows/python-publish.yml

@@ -42,20 +42,3 @@ jobs:
       with:
         user: __token__
         password: ${{ secrets.PYPI_API_TOKEN }}
-
-
-  test:
-    needs: [publish-pypi]
-    runs-on: ubuntu-latest
-
-    steps:
-    - uses: actions/download-artifact@v3
-      with:
-        name: dist
-        path: ./dist
-
-    - name: Publish package
-      uses: pypa/gh-action-pypi-publish@27b31702a0e7fc50959f5ad993c78deac1bdfc29
-      with:
-        user: __token__
-        password: ${{ secrets.PYPI_API_TOKEN }}

setup.py

@@ -2,7 +2,6 @@
 import os
 from setuptools import find_packages
 import subprocess
-import sys
 
 VERSION = "0.3.3"
 
@@ -47,6 +46,14 @@ def run_command(cmd):
 # update version file...
 conf_version("VERSION.in", VERSION, "biosmoother/VERSION")
 
+def package_files(directory):
+    paths = []
+    for (path, _, filenames) in os.walk(directory):
+        for filename in filenames:
+            paths.append(os.path.join('..', path, filename))
+    return paths
+extra_files = package_files('biosmoother')
+print(extra_files)
 
 setup(
     name="biosmoother",
@@ -61,6 +68,7 @@ def run_command(cmd):
     """,
     py_modules=["cli"],
     packages=find_packages(where='.'),
+    package_data={'biosmoother': extra_files},
     include_package_data=True,
     data_files=[("biosmoother", ["biosmoother/VERSION"])],
     extras_require={"test": "pytest"},