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Added XGNN implementation to PyG #1

Merged
merged 126 commits into from
Dec 14, 2023
Merged

Added XGNN implementation to PyG #1

merged 126 commits into from
Dec 14, 2023

Commits on Nov 7, 2023

  1. initial commit

    Simon Bele authored and Simon Bele committed Nov 7, 2023
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  2. added base files

    Simon Bele authored and Simon Bele committed Nov 7, 2023
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  3. a

    Simon Bele authored and Simon Bele committed Nov 7, 2023
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  4. a

    Simon Bele authored and Simon Bele committed Nov 7, 2023
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  5. a

    Simon Bele authored and Simon Bele committed Nov 7, 2023
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  6. a

    Simon Bele authored and Simon Bele committed Nov 7, 2023
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  7. XGNNExplainer example

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  8. XGNNExplanation example

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  9. Expaliner expanded to handle GenerativeExplanation

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  10. changes

    Simon Bele authored and Simon Bele committed Nov 7, 2023
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  11. changes

    Simon Bele authored and Simon Bele committed Nov 7, 2023
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  12. changes

    Simon Bele authored and Simon Bele committed Nov 7, 2023
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  13. changes

    Simon Bele authored and Simon Bele committed Nov 7, 2023
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  14. Updated explanation documentation

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  15. modified: torch_geometric/explain/algorithm/xgnn_explainer.py

    Simon Bele authored and Simon Bele committed Nov 7, 2023
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  16. testing

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  17. testing

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  18. adapted generativeExplanaton

    Simon Bele authored and Simon Bele committed Nov 7, 2023
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  19. a

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Commits on Nov 14, 2023

  1. Commit to pull

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  2. Code cleaned

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  3. XGNNGenerator documentation update

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  4. a

    Simon Bele authored and Simon Bele committed Nov 14, 2023
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  5. class name reformat fix

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Commits on Nov 15, 2023

  1. XGNNExplainer docs update

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Commits on Nov 30, 2023

  1. masks in GraphGenerator

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  2. XGNNTrainer name fixed

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  3. added datasets and classes, pretrained model

    Simon Bele authored and Simon Bele committed Nov 30, 2023
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  4. adjustment

    Simon Bele authored and Simon Bele committed Nov 30, 2023
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  5. added pretrained model to example

    Simon Bele authored and Simon Bele committed Nov 30, 2023
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  6. test XGNNTrainer names fixed

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  7. Merge branch 'dev' of https://github.com/SimonBele/pytorch_geometric … 

    …into dev
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  8. calculate reward function

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  9. bla

    Simon Bele authored and Simon Bele committed Nov 30, 2023
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  10. commit

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  11. commit

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  12. calculate reward function

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  13. Merge branch 'dev' of https://github.com/SimonBele/pytorch_geometric … 

    …into dev
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  14. train_generative_model development

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  15. new ExplanationType added

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  16. fixing semantic/other errors

    @amadejp
    amadejp committed Nov 30, 2023
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Commits on Dec 5, 2023

  1. debugging rl example

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  2. dev

    Simon Bele authored and Simon Bele committed Dec 5, 2023
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  3. debugging

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  4. Update xgnn_explainer.py

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  5. dev

    Simon Bele authored and Simon Bele committed Dec 5, 2023
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  6. Merge branch 'dev' of github.com:SimonBele/pytorch_geometric into dev

    Simon Bele authored and Simon Bele committed Dec 5, 2023
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  7. a

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  8. debugging GraphGenerator and RL example in general

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  9. Merge branch 'dev' of https://github.com/SimonBele/pytorch_geometric … 

    …into dev
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Commits on Dec 7, 2023

  1. debigging

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  2. refactored

    Simon Bele authored and Simon Bele committed Dec 7, 2023
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  3. mutag added, seperate directory created

    Simon Bele authored and Simon Bele committed Dec 7, 2023
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  4. debugging

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  5. Merge branch 'dev' of https://github.com/SimonBele/pytorch_geometric … 

    …into dev
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  6. fixes

    Simon Bele authored and Simon Bele committed Dec 7, 2023
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  7. a

    Simon Bele authored and Simon Bele committed Dec 7, 2023
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  8. objectview

    Simon Bele authored and Simon Bele committed Dec 7, 2023
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  9. Update xgnn_explainer.py

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  10. candidate set extracted from data

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  11. debugging

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  12. Update xgnn_explainer.py

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  13. Update xgnn_explainer.py

    @amadejp
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  14. debugging RL example

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  15. froze pretrained

    Simon Bele authored and Simon Bele committed Dec 7, 2023
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  16. custom softmax function added

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  17. simon hated doing this 

    blaz will make it prettier
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Commits on Dec 11, 2023

  1. another model added

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  2. code made prettier 

    As per request
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  3. debugging 

    Added a line to make a copy of graph_state in rollout reward, because it was adding to the existing graph every iteration.
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Commits on Dec 12, 2023

  1. added weight initialization

    Simon Bele authored and Simon Bele committed Dec 12, 2023
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  2. better training

    Simon Bele authored and Simon Bele committed Dec 12, 2023
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  3. added pretrained model

    Simon Bele authored and Simon Bele committed Dec 12, 2023
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  4. Fix XGNNExplainer to handle missing candidate_set argument

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  5. Merge branch 'dev' of https://github.com/SimonBele/pytorch_geometric … 

    …into dev
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  6. debugging + Add initial_node_type parameter to RLGenExplainer constru… 

    …ctor
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  7. refactored xgnnexplainer

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  8. refactor fix

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  9. debugging

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  10. Merge branch 'dev' of https://github.com/SimonBele/pytorch_geometric … 

    …into dev
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  11. a

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  12. Merge branch 'dev' of github.com:SimonBele/pytorch_geometric into dev

    @SimonBele
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  13. fixed validate

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  14. xgnn model fixing

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  15. model args and .pth updated

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  16. single graph prediction support in pretrained

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  17. rl example gnn_output updated

    @amadejp
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  18. quickfix

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  19. Fix bug in login functionality

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  20. added generatemodel base class

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  21. changed generativeExplanation

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  22. merge conflict resolved + minor changes

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Commits on Dec 13, 2023

  1. added base class

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  2. Merge branch 'dev' of github.com:SimonBele/pytorch_geometric into dev

    @SimonBele
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  3. fixed imports

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  4. changed generative explanation, explanation set sampler

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  5. a

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  6. aaa

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  7. updated graphGenerator forward logic

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  8. a

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  9. no list anymore

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  10. aAaaaa

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  11. aAaaaa

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  12. small hotfixes

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  13. Update xgnn_explainer.py

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  14. Added graph visualisations

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  15. Merge branch 'dev' of https://github.com/SimonBele/pytorch_geometric … 

    …into dev
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  16. Refactor graph sampling and training process

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  17. something works :)

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  18. Graph visualisations improved

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  19. merge

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  20. Code cleanup + example almost completed with multiple graphs of diffe… 

    …rent sizes ploted
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  21. Refactor xgnn_explainer.py: Clean up code, remove unused functions, a… 

    …nd add docstrings.
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  22. Delete unnecessary code and unused imports

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  23. Directory cleanup

    @amadejp
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  24. Better visualisation

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  25. Merge branch 'dev' of https://github.com/SimonBele/pytorch_geometric … 

    …into dev
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  26. prettier code

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  27. Visualisation finnished 

    forreal this time
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    BP4769 committed Dec 13, 2023
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  28. Merge branch 'dev' of https://github.com/SimonBele/pytorch_geometric … 

    …into dev
    @BP4769
    BP4769 committed Dec 13, 2023
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  29. Class & Function descriptions reformat 

    follows PyG commenting style
    @amadejp
    amadejp committed Dec 13, 2023
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Commits on Dec 14, 2023

  1. code & dir cleanup

    @amadejp
    amadejp committed Dec 14, 2023
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  2. Added pytest for generative explanation

    @amadejp
    amadejp committed Dec 14, 2023
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  3. PEP8 reformat

    @amadejp
    amadejp committed Dec 14, 2023
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  4. Update CHANGELOG.md

    @amadejp
    amadejp committed Dec 14, 2023
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  5. Merge branch 'master' into dev

    @SimonBele
    SimonBele committed Dec 14, 2023
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