Mnor changes elsewhere, but big changes in the tables_chron file, t…

…rying to get it to the taxonomy table standards.
SimonGoring · Apr 12, 2016 · 1a52b06 · 1a52b06
1 parent dfcf672
commit 1a52b06
Show file tree

Hide file tree

Showing 19 changed files with 345 additions and 504 deletions.
diff --git a/_build/doctrees/environment.pickle b/_build/doctrees/environment.pickle
diff --git a/_build/doctrees/index.doctree b/_build/doctrees/index.doctree
diff --git a/_build/doctrees/sql_quickly.doctree b/_build/doctrees/sql_quickly.doctree
diff --git a/_build/doctrees/tables_chron.doctree b/_build/doctrees/tables_chron.doctree
diff --git a/_build/doctrees/tables_taxa.doctree b/_build/doctrees/tables_taxa.doctree
diff --git a/_build/html/_sources/index.txt b/_build/html/_sources/index.txt
@@ -14,6 +14,7 @@ Contents:
 
 .. toctree::
    :maxdepth: -1
+   :hidden:
 
    neotoma_introduction
    db_design_concepts

diff --git a/_build/html/_sources/sql_quickly.txt b/_build/html/_sources/sql_quickly.txt
@@ -1,18 +1,7 @@
 SQL Quickly
 ------------------------------
 
-SQL (Sturctured Query Language) is a standard language for querying and
-modifying relational databases. It is an ANSI and ISO standard, although
-various vendors have added proprietary extensions. It is beyond the
-scope of this document to describe SQL or the differences between
-Microsoft Access SQL and ANSI SQL. However, examples of SQL queries are
-provided in this document as a tutorial. Most users of Access probably
-use the graphical design view for queries, but SQL queries are better
-suited for examples. These queries can by typed or copied and pasted
-into the Access query SQL view. The query can then be executed or opened
-in design view to show the graphical representation. One difference
-between Access SQL and other flavors is the wildcard; Access uses \*
-rather than %.
+SQL (Sturctured Query Language) is a standard language for querying and modifying relational databases. It is an ANSI and ISO standard, although various vendors have added proprietary extensions. It is beyond the scope of this document to describe SQL or the differences between Microsoft Access SQL and ANSI SQL. However, examples of SQL queries are provided in this document as a tutorial. Most users of Access probably use the graphical design view for queries, but SQL queries are better suited for examples. These queries can by typed or copied and pasted into the Access query SQL view. The query can then be executed or opened in design view to show the graphical representation. One difference between Access SQL and other flavors is the wildcard; Access uses \* rather than %.
 
 SQL Example
 ~~~~~~~~~~~
@@ -52,9 +41,7 @@ Within tables there are often Keys.  A Key may be a **Primary Key** (PK), which
 Data Types
 ~~~~~~~~~~~
 
-In the table descriptions in the following section, the SQL Server data
-types are given for field descriptions. The equivalent Access data types
-are given in the following table.
+In the table descriptions in the following section, the SQL Server data types are given for field descriptions. The equivalent Access data types are given in the following table.
 
 +------------------------------------+------------------------+
 | **SQL Server data type**           | **Access data type**   |

diff --git a/_build/html/_sources/tables_chron.txt b/_build/html/_sources/tables_chron.txt
diff --git a/_build/html/_sources/tables_taxa.txt b/_build/html/_sources/tables_taxa.txt
@@ -433,7 +433,7 @@ This table lists all taxa in the database. Most taxa are biological taxa; howeve
 **Notes** 
    Free form notes or comments about the Taxon.
 
-.. _TaxaGroupType:
+.. _TaxaGroupTypes:
 
 TaxaGroupTypes
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -662,6 +662,8 @@ Result:
 | Bison bison antiquus   | human butchering           | San Jon                    |
 +------------------------+----------------------------+----------------------------+
 
+.. _VariableContexts:
+
 VariableContexts
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
@@ -717,7 +719,7 @@ Lookup table of Variable Elements. Table is referenced by the :ref:`Variables` t
 **VariableElement** 
    The element, part, or organ of the taxon identified. For plants, these include pollen, spores, and various macrofossil organs, such as «seed», «twig», «cone», and «cone bract». Thus, *Betula* pollen and *Betula* seeds are two different Variables. For mammals, Elements include the bone or tooth identified, e.g. «tibia». «tibia, distal, left», «M2, lower, left». Some more unusual elements are *Neotoma* fecal pellets and *Erethizon dorsata* quills. If no element is indicated for mammalian fauna, then the genric element «bone/tooth» is assigned. Elements were not assigned in FAUNMAP, so all Variables ingested from FAUNMAP were assigned the «bone/tooth» element. Physical Variables may also have elements. For example, the Loss-on-ignition Variables have «Loss-on-ignition» as a Taxon, and temperature of analysis as an element, e.g. «500°C», «900°C». Charcoal Variables have the size fragments as elements, e.g. «75-100 µm», «100-125 µm».
 
-.. _VariableModification:
+.. _VariableModifications:
 
 VariableModifications
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~

diff --git a/_build/html/index.html b/_build/html/index.html
diff --git a/_build/html/objects.inv b/_build/html/objects.inv
diff --git a/_build/html/searchindex.js b/_build/html/searchindex.js
diff --git a/_build/html/sql_quickly.html b/_build/html/sql_quickly.html
@@ -93,18 +93,11 @@
 <li class="toctree-l1"><a class="reference internal" href="neotoma_tables.html">Neotoma Tables</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tables_chron.html">Chronology &amp; Age Related Tables</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tables_dataset.html">Dataset &amp; Collection Related Tables</a></li>
-<li class="toctree-l1"><a class="reference internal" href="tables_dataset.html#datasetpublications">DatasetPublications</a></li>
-<li class="toctree-l1"><a class="reference internal" href="tables_dataset.html#datasetsubmissions">DatasetSubmissions</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tables_samples.html">Sample Related Tables</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tables_site.html">Site Related Tables</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tables_taxa.html">Taxonomy Related Tables</a></li>
-<li class="toctree-l1"><a class="reference internal" href="tables_taxa.html#table-taxa">Table: Taxa</a></li>
 <li class="toctree-l1"><a class="reference internal" href="table_contacts.html">Contact and Individual Related Tables</a></li>
 <li class="toctree-l1"><a class="reference internal" href="table_publications.html">Publication Related Tables</a></li>
-<li class="toctree-l1"><a class="reference internal" href="table_publications.html#table-publicationauthors">Table: PublicationAuthors</a></li>
-<li class="toctree-l1"><a class="reference internal" href="table_publications.html#table-publicationeditors">Table: PublicationEditors</a></li>
-<li class="toctree-l1"><a class="reference internal" href="table_publications.html#table-publications">Table: Publications</a></li>
-<li class="toctree-l1"><a class="reference internal" href="table_publications.html#table-publicationtypes">Table: PublicationTypes</a></li>
 <li class="toctree-l1"><a class="reference internal" href="references_cited.html">References Cited</a></li>
 </ul>
 
@@ -152,18 +145,7 @@
 
   <div class="section" id="sql-quickly">
 <h1>SQL Quickly<a class="headerlink" href="#sql-quickly" title="Permalink to this headline">¶</a></h1>
-<p>SQL (Sturctured Query Language) is a standard language for querying and
-modifying relational databases. It is an ANSI and ISO standard, although
-various vendors have added proprietary extensions. It is beyond the
-scope of this document to describe SQL or the differences between
-Microsoft Access SQL and ANSI SQL. However, examples of SQL queries are
-provided in this document as a tutorial. Most users of Access probably
-use the graphical design view for queries, but SQL queries are better
-suited for examples. These queries can by typed or copied and pasted
-into the Access query SQL view. The query can then be executed or opened
-in design view to show the graphical representation. One difference
-between Access SQL and other flavors is the wildcard; Access uses *
-rather than %.</p>
+<p>SQL (Sturctured Query Language) is a standard language for querying and modifying relational databases. It is an ANSI and ISO standard, although various vendors have added proprietary extensions. It is beyond the scope of this document to describe SQL or the differences between Microsoft Access SQL and ANSI SQL. However, examples of SQL queries are provided in this document as a tutorial. Most users of Access probably use the graphical design view for queries, but SQL queries are better suited for examples. These queries can by typed or copied and pasted into the Access query SQL view. The query can then be executed or opened in design view to show the graphical representation. One difference between Access SQL and other flavors is the wildcard; Access uses * rather than %.</p>
 <div class="section" id="sql-example">
 <h2>SQL Example<a class="headerlink" href="#sql-example" title="Permalink to this headline">¶</a></h2>
 <p>The following SQL example lists the number of sites by GeoPoliticalID (the name of the country) for and GeoPoliticalID that is defined as a country.</p>
@@ -215,9 +197,7 @@ <h2>Table Keys<a class="headerlink" href="#table-keys" title="Permalink to this
 </div>
 <div class="section" id="data-types">
 <h2>Data Types<a class="headerlink" href="#data-types" title="Permalink to this headline">¶</a></h2>
-<p>In the table descriptions in the following section, the SQL Server data
-types are given for field descriptions. The equivalent Access data types
-are given in the following table.</p>
+<p>In the table descriptions in the following section, the SQL Server data types are given for field descriptions. The equivalent Access data types are given in the following table.</p>
 <table border="1" class="docutils">
 <colgroup>
 <col width="60%" />