ENH: Add references in registration modules from output transforms to…

… inputs
SlicerRt · Mar 21, 2019 · cae80e5 · cae80e5
1 parent 1a57ab3
commit cae80e5
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Showing 3 changed files with 58 additions and 56 deletions.
diff --git a/PlmBspline/plastimatch_slicer_bspline.xml b/PlmBspline/plastimatch_slicer_bspline.xml
@@ -83,7 +83,7 @@
       <description>Fiducials in moving volume</description>
       <label>Moving fiducials (old)</label>
     </point>
-    
+
     <!-- Outputs -->
     <image>
       <name>plmslc_output_warped</name>
@@ -92,6 +92,7 @@
       <default>None</default>
       <description>Warped output image</description>
       <label>Output volume</label>
+      <reference role="source" parameter="plmslc_moving_volume"/>
     </image>
     <transform fileExtensions=".txt" type="bspline">
       <name>plmslc_output_bsp</name>
@@ -100,6 +101,12 @@
       <default>None</default>
       <description>B-spline coefficients created by registration</description>
       <label>Output B-spline transform (MRML)</label>
+      <reference role="spatialRegistrationMoving" parameter="plmslc_moving_volume"/>
+      <reference role="spatialRegistrationMoving" parameter="plmslc_moving_fiducials_pointfile"/>
+      <reference role="spatialRegistrationMoving" parameter="plmslc_moving_fiducials"/>
+      <reference role="spatialRegistrationFixed" parameter="plmslc_fixed_volume"/>
+      <reference role="spatialRegistrationFixed" parameter="plmslc_fixed_fiducials_pointfile"/>
+      <reference role="spatialRegistrationFixed" parameter="plmslc_fixed_fiducials"/>
     </transform>
     <transform fileExtensions=".nrrd" type="nonlinear">
       <name>plmslc_output_vf</name>
@@ -108,6 +115,12 @@
       <default>None</default>
       <description>Deformation field created by registration</description>
       <label>Output vector field (MRML)</label>
+      <reference role="spatialRegistrationMoving" parameter="plmslc_moving_volume"/>
+      <reference role="spatialRegistrationMoving" parameter="plmslc_moving_fiducials_pointfile"/>
+      <reference role="spatialRegistrationMoving" parameter="plmslc_moving_fiducials"/>
+      <reference role="spatialRegistrationFixed" parameter="plmslc_fixed_volume"/>
+      <reference role="spatialRegistrationFixed" parameter="plmslc_fixed_fiducials_pointfile"/>
+      <reference role="spatialRegistrationFixed" parameter="plmslc_fixed_fiducials"/>
     </transform>
     <pointfile multiple="true" fileExtensions=".fcsv" coordinateSystem="ras">
       <name>plmslc_warped_fiducials_pointfile</name>
@@ -426,5 +439,5 @@
       <longflag>its</longflag>
       <description>Maximum number of iterations</description>
     </integer>
-  </parameters>    
+  </parameters>
 </executable>
diff --git a/PlmLandwarp/plastimatch_slicer_landwarp.xml b/PlmLandwarp/plastimatch_slicer_landwarp.xml
@@ -50,6 +50,7 @@
       <channel>output</channel>
       <default>None</default>
       <description>Warped output image</description>
+      <reference role="source" parameter="plmslc_landwarp_moving_volume"/>
     </image>
     <transform fileExtensions=".nrrd" type="nonlinear">
       <name>plmslc_landwarp_output_vf</name>
@@ -58,6 +59,10 @@
       <label>Output vector field (MRML)</label>
       <default>None</default>
       <channel>output</channel>
+      <reference role="spatialRegistrationMoving" parameter="plmslc_landwarp_moving_fiducials"/>
+      <reference role="spatialRegistrationMoving" parameter="plmslc_landwarp_moving_volume"/>
+      <reference role="spatialRegistrationFixed" parameter="plmslc_landwarp_fixed_fiducials"/>
+      <reference role="spatialRegistrationFixed" parameter="plmslc_landwarp_fixed_volume"/>
     </transform>
     <string>
       <name>plmslc_landwarp_output_vf_f</name>