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Extend documentation
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mali-git committed Jan 17, 2019
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65 changes: 65 additions & 0 deletions docs/source/run_biokeen.rst
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Run BioKEEN
==========

Configure an experiment through the CLI and train and evaluate a model
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

To get an overview of the avilable commands in BioKEEN, please run:

.. code-block:: python
biokeen
**Step 1**: Start CLI

.. code-block:: python
biokeen start
**Step 2**: Provide the dataset

.. image:: ../images/provide_dataset.png
:target: pageapplet/index.html


**Step 3**: Specify execution mode

.. image:: ../images/execution_mode.png
:target: pageapplet/index.html

**Step 4**: Select KGE model

.. image:: ../images/select_model.png
:target: pageapplet/index.html

**Step 5**: Specify model dependent hyper-parameters

**Step 6**: Specify the batch-size
.. image:: ../images/batch_size.png
:target: pageapplet/index.html

**Step 7**: Specify the number of training epochs
.. image:: ../images/epochs.png
:target: pageapplet/index.html

**Step 8**: Specify whether to evaluate the model
.. image:: ../images/epochs.png
:target: pageapplet/index.html

**Step 9**: Specify whether to evaluate the model
.. image:: ../images/epochs.png
:target: pageapplet/index.html

**Step 10**: Provide a random seed
.. image:: ../images/random_seed.png
:target: pageapplet/index.html

**Step 12**: Specify preferred device
.. image:: ../images/random_seed.png
:target: pageapplet/index.html

**Step 13**: Specify the path to the output directory
.. image:: ../images/output_directory.png
:target: pageapplet/index.html

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