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cthoyt committed Nov 14, 2018
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1 change: 0 additions & 1 deletion docs/source/bio2bel_repositories.rst
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Biological Databases
====================

The following biological databases can be used for training and evaluating knowledge graph embeddings. This is done
by using the `Bio2BEL <https://github.com/bio2bel>`_ universe.

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10 changes: 5 additions & 5 deletions docs/source/index.rst
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BioKEEN
=======

BioKEEN (Python KnowlEdge EmbeddiNgs) is wrapper around `PyKEEN <https://github.com/SmartDataAnalytics/BioKEEN>`_ for
training and evaluating **biological** knowledge graph embeddings.
BioKEEN (Python KnowlEdge EmbeddiNgs) is wrapper around `PyKEEN <https://github.com/SmartDataAnalytics/PyKEEN>`_ for
training and evaluating **biological** knowledge graph embeddings.

Installation is as easy as getting the code from `PyPI <https://pypi.python.org/pypi/biokeen>`_ with
:code:`python3 -m pip install biokeen`
:code:`python3 -m pip install biokeen`.

Citation
--------
If you use BioKEEN in your work, please cite [1]_:

.. [1] Ali, M., *et al.* (2018). `BioKEEN: A library for learning and evaluating biological knowledge graph embeddings <https://zenodo.org/badge/latestdoi/136345023>`_.
.. [1] Ali, M., *et al.* (2018). `BioKEEN: A library for learning and evaluating biological knowledge graph embeddings
<https://zenodo.org/badge/latestdoi/136345023>`_.
.. toctree::
:maxdepth: 2
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8 changes: 4 additions & 4 deletions docs/source/installation.rst
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~~~~~~~
Download the latest stable code from `PyPI <https://pypi.python.org/pypi/biokeen>`_ with:

.. code-block:: python
.. code-block:: sh
python3 -m pip install biokeen
$ python3 -m pip install biokeen
Get the Latest
~~~~~~~~~~~~~~~
Download the most recent code from `GitHub <https://github.com/SmartDataAnalytics/BioKEEN>`_ with:

.. code-block:: python
.. code-block:: sh
python3 -m pip install git+https://github.com/SmartDataAnalytics/BioKEEN.git@develop
$ python3 -m pip install git+https://github.com/SmartDataAnalytics/BioKEEN.git
.. |python_versions| image:: https://img.shields.io/pypi/pyversions/biokeen.svg
:alt: Stable Supported Python Versions
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