Refactor

docs/source/conf.py

@@ -13,10 +13,16 @@
 # documentation root, use os.path.abspath to make it absolute, like shown here.
 #
 import os
-import sys
 import re
-sys.path.insert(0, os.path.abspath('../../src'))
+import sys
 
+import mock
+
+# -- Mockup PyTorch to exclude it while compiling the docs--------------------------------------------------------------
+MOCK_MODULES = ['pytorch']
+for mod_name in MOCK_MODULES:
+    sys.modules[mod_name] = mock.Mock()
+sys.path.insert(0, os.path.abspath('../../src'))
 
 # -- Project information -----------------------------------------------------
 
@@ -27,7 +33,6 @@
 # The full version, including alpha/beta/rc tags.
 release = '0.0.4-dev'
 
-
 # The short X.Y version.
 parsed_version = re.match(
     '(?P<major>\d+)\.(?P<minor>\d+)\.(?P<patch>\d+)(?:-(?P<release>[0-9A-Za-z-]+(?:\.[0-9A-Za-z-]+)*))?(?:\+(?P<build>[0-9A-Za-z-]+(?:\.[0-9A-Za-z-]+)*))?',
@@ -82,7 +87,6 @@
 # The name of the Pygments (syntax highlighting) style to use.
 pygments_style = None
 
-
 # -- Options for HTML output -------------------------------------------------
 
 # The theme to use for HTML and HTML Help pages.  See the documentation for
@@ -117,7 +121,6 @@
 # Output file base name for HTML help builder.
 htmlhelp_basename = 'BioKEENdoc'
 
-
 # -- Options for LaTeX output ------------------------------------------------
 
 latex_elements = {
@@ -146,7 +149,6 @@
      'Mehdi Ali, Charles Tapley Hoyt, and Daniel Domingo-Fernández', 'manual'),
 ]
 
-
 # -- Options for manual page output ------------------------------------------
 
 # One entry per manual page. List of tuples
@@ -156,7 +158,6 @@
      [author], 1)
 ]
 
-
 # -- Options for Texinfo output ----------------------------------------------
 
 # Grouping the document tree into Texinfo files. List of tuples
@@ -168,7 +169,6 @@
      'Miscellaneous'),
 ]
 
-
 # -- Options for Epub output -------------------------------------------------
 
 # Bibliographic Dublin Core info.
@@ -186,7 +186,6 @@
 # A list of files that should not be packed into the epub file.
 epub_exclude_files = ['search.html']
 
-
 # -- Extension configuration -------------------------------------------------
 
 # -- Options for intersphinx extension ---------------------------------------

setup.cfg

@@ -27,6 +27,7 @@ keywords =
 
 [options]
 install_requires =
+    mock
     pybel
     bio2bel
     tqdm