New release

.bumpversion.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.0.4-dev
+current_version = 0.0.4
 commit = True
 tag = False
 parse = (?P<major>\d+)\.(?P<minor>\d+)\.(?P<patch>\d+)(?:-(?P<release>[0-9A-Za-z-]+(?:\.[0-9A-Za-z-]+)*))?(?:\+(?P<build>[0-9A-Za-z-]+(?:\.[0-9A-Za-z-]+)*))?

docs/source/conf.py

@@ -28,7 +28,7 @@
 author = 'Mehdi Ali, Charles Tapley Hoyt, and Daniel Domingo-Fernández'
 
 # The full version, including alpha/beta/rc tags.
-release = '0.0.4-dev'
+release = '0.0.4'
 
 # The short X.Y version.
 parsed_version = re.match(

setup.cfg

@@ -4,7 +4,7 @@
 # Configuring setup()
 [metadata]
 name = biokeen
-version = 0.0.4-dev
+version = 0.0.4
 url = https://github.com/SmartDataAnalytics/BioKEEN
 author = Mehdi Ali
 author_email = mehdi.ali@cs.uni-bonn.de

src/biokeen/cli.py

@@ -7,22 +7,21 @@
 from collections import OrderedDict
 
 import click
-
 import pykeen
 from bio2bel.constants import get_global_connection
-from biokeen.build import ensure_compath, ensure_drugbank, ensure_hippie, iterate_source_paths
-from biokeen.cli_utils.bio_2_bel_utils import install_bio2bel_module
-from biokeen.cli_utils.cli_print_msg_helper import print_intro, print_welcome_message
-from biokeen.cli_utils.cli_query_helper import select_database
 from pykeen.cli import (
     prompt_device, prompt_embedding_model, prompt_evaluation_parameters, prompt_execution_parameters,
     prompt_output_directory, prompt_random_seed, prompt_training_file,
 )
 from pykeen.constants import EXECUTION_MODE, HPO_MODE, TRAINING_MODE, TRAINING_SET_PATH
 from pykeen.predict import start_predictions_piepline
 from pykeen.utilities.cli_utils.cli_print_msg_helper import (
-    print_execution_mode_message, print_section_divider, print_training_set_message,
-)
+    print_execution_mode_message, print_section_divider, )
+
+from biokeen.build import ensure_compath, ensure_drugbank, ensure_hippie, iterate_source_paths
+from biokeen.cli_utils.bio_2_bel_utils import install_bio2bel_module
+from biokeen.cli_utils.cli_print_msg_helper import print_intro, print_welcome_message
+from biokeen.cli_utils.cli_query_helper import select_database
 
 connection_option = click.option(
     '-c',
@@ -52,7 +51,6 @@ def prompt_config(connection, rebuild):
         database_name = select_database()
         config[TRAINING_SET_PATH] = install_bio2bel_module(name=database_name, connection=connection, rebuild=rebuild)
     else:
-        print_training_set_message()
         prompt_training_file(config)
 
     print_section_divider()

src/biokeen/constants.py

@@ -9,7 +9,7 @@
 DATA_DIR = os.environ.get(DATA_DIR_ENVVAR) or os.path.abspath(os.path.join(HERE, os.pardir, os.pardir, 'data'))
 os.makedirs(DATA_DIR, exist_ok=True)
 
-VERSION = '0.0.4-dev'
+VERSION = '0.0.4'
 
 CONFIG_PATH = os.path.join(DATA_DIR, "configuration.json")
 EMOJI = '🍩'