Update run_biokeen.rst

docs/source/run_biokeen.rst

@@ -1,65 +1,59 @@
 Run BioKEEN
-==========
-
+===========
 Configure an experiment through the CLI and train and evaluate a model
-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-To get an overview of the avilable commands in BioKEEN, please run:
+----------------------------------------------------------------------
+To get an overview of the available commands in BioKEEN, please run:
 
-.. code-block:: python
+.. code-block:: sh
 
    biokeen
 
-
-**Step 1**: Start CLI
-
-.. code-block:: python
+Step 1: Start CLI
+~~~~~~~~~~~~~~~~~
+.. code-block:: sh
 
    biokeen start
 
-**Step 2**: Provide the dataset
+Step 2: Provide the dataset
+~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
 .. image:: ../images/provide_dataset.png
-   :target: pageapplet/index.html
-
-
-**Step 3**: Specify execution mode
 
+Step 3: Specify execution mode
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 .. image:: ../images/execution_mode.png
-   :target: pageapplet/index.html
-
-**Step 4**: Select KGE model
 
+Step 4: Select KGE model
+~~~~~~~~~~~~~~~~~~~~~~~~
 .. image:: ../images/select_model.png
-   :target: pageapplet/index.html
 
-**Step 5**: Specify model dependent hyper-parameters
+Step 5: Specify model dependent hyper-parameters
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
-**Step 6**: Specify the batch-size
+Step 6: Specify the batch-size
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 .. image:: ../images/batch_size.png
-   :target: pageapplet/index.html
 
-**Step 7**: Specify the number of training epochs
+Step 7: Specify the number of training epochs
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 .. image:: ../images/epochs.png
-   :target: pageapplet/index.html
 
-**Step 8**: Specify whether to evaluate the model
+Step 8: Specify whether to evaluate the model
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 .. image:: ../images/epochs.png
-   :target: pageapplet/index.html
 
-**Step 9**: Specify whether to evaluate the model
+Step 9: Specify whether to evaluate the model
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 .. image:: ../images/epochs.png
-   :target: pageapplet/index.html
 
-**Step 10**: Provide a random seed
+Step 10: Provide a random seed
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 .. image:: ../images/random_seed.png
-   :target: pageapplet/index.html
 
-**Step 12**: Specify preferred device
+Step 12: Specify preferred device
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 .. image:: ../images/random_seed.png
-   :target: pageapplet/index.html
 
-**Step 13**: Specify the path to the output directory
+Step 13: Specify the path to the output directory
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 .. image:: ../images/output_directory.png
-   :target: pageapplet/index.html
-