FIX: Towards mongodb, changed the way empty stuff is added;

Fixed order with which traj is marked stored;
SmokinCaterpillar · May 17, 2016 · e8ef1d8 · e8ef1d8
1 parent 89f5b8b
commit e8ef1d8
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Showing 3 changed files with 2 additions and 4 deletions.
diff --git a/.travis.yml b/.travis.yml
@@ -54,7 +54,6 @@ before_install:
   # Replace dep1 dep2 ... with your dependencies
   - conda create -q -n test-environment python=$TRAVIS_PYTHON_VERSION pip numpy scipy
   - source activate test-environment
-  - pip freeze
 
 
 install:
@@ -90,6 +89,7 @@ install:
   - echo "+++++++++++ Installing PYPET unless coverage +++++++++++"
   - if [[ $COVERAGE == OFF ]]; then travis_retry python setup.py install; fi
   - echo "+++++++++++ FINISHED INSTALL +++++++++++"
+  - pip freeze
 
 
 # Script command for all tests

diff --git a/pypet/backends/mongodb.py b/pypet/backends/mongodb.py
@@ -908,7 +908,7 @@ def _srvc_update_db(self, entry, _id, how='$setOnInsert', upsert=True):
         if entry:
             add = {how: entry}
         else:
-            add = {'$set':{'_id': _id}}
+            add = {how: {'_': '_'}}
         u = pymongo.UpdateOne({'_id': _id}, add, upsert=upsert)
         self._bulk.append(u)
         if len(self._bulk) > self._max_bulk_length:

diff --git a/pypet/storageservice.py b/pypet/storageservice.py
@@ -2484,8 +2484,6 @@ def _trj_store_trajectory(self, traj, only_init=False, store_data=pypetconstants
                                                            name=self._trajectory_name,
                                                            title=self._trajectory_name,
                                                            filters=self._all_get_filters())
-        traj._stored = True
-
         # Store meta information
         self._trj_store_meta_data(traj)