details for the copy command

SnakeChunks · Oct 1, 2018 · 2134200 · 2134200
1 parent 5b5952f
commit 2134200
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/scripts/snakefiles/rules/bowtie2_index.rules b/scripts/snakefiles/rules/bowtie2_index.rules
@@ -48,7 +48,7 @@ rule bowtie2_index:
     conda:  "../envs/bowtie2.yaml"
     shell: """
 mkdir -p {params.dir}
-cp {input} {params.dir}
+cp -f {input} {params.dir}/
 bowtie2-build {output}  {output} --threads {params.threads} &> {log}
 """