Merge branch 'master' of github.com:SnakeChunks/SnakeChunks

SnakeChunks · Aug 2, 2018 · 62b907d · 62b907d
2 parents 2566861 + 6496381
commit 62b907d
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diff --git a/scripts/snakefiles/workflows/RNA-seq_DEG.wf b/scripts/snakefiles/workflows/RNA-seq_DEG.wf
@@ -116,6 +116,7 @@ include: os.path.join(RULES, "index_bam.rules")
 include: os.path.join(RULES, "sartools_DESeq2.rules")
 include: os.path.join(RULES, "sartools_edgeR.rules")
 include: os.path.join(RULES, "sartools_targetfile.rules")
+include: os.path.join(RULES, "sickle.rules")
 include: os.path.join(RULES, "subread_align.rules")
 include: os.path.join(RULES, "subread_featureCounts.rules")
 include: os.path.join(RULES, "subread_featureCounts_all.rules")

diff --git a/scripts/snakefiles/workflows/RNA-seq_complete.wf b/scripts/snakefiles/workflows/RNA-seq_complete.wf
@@ -145,6 +145,7 @@ include: os.path.join(RULES, "md5sum.rules")
 include: os.path.join(RULES, "sartools_targetfile.rules")
 include: os.path.join(RULES, "sartools_DESeq2.rules")
 #include: os.path.join(RULES, "sartools_edgeR.rules")
+include: os.path.join(RULES, "sickle.rules")
 #include: os.path.join(RULES, "subread_align.rules")
 include: os.path.join(RULES, "subread_featureCounts_all.rules")
 include: os.path.join(RULES, "subread_featureCounts.rules")

diff --git a/scripts/snakefiles/workflows/RNA-seq_transcripts.wf b/scripts/snakefiles/workflows/RNA-seq_transcripts.wf
@@ -116,6 +116,7 @@ include: os.path.join(RULES, "genome_coverage_bigwig.rules")
 include: os.path.join(RULES, "get_chrom_sizes.rules")
 include: os.path.join(RULES, "gzip.rules")
 include: os.path.join(RULES, "index_bam.rules")
+include: os.path.join(RULES, "sickle.rules")
 include: os.path.join(RULES, "subread_align.rules")
 include: os.path.join(RULES, "subread_featureCounts.rules")
 include: os.path.join(RULES, "subread_featureCounts_all.rules")