corrected bug caused by conditions being intergers instead of strings

SnakeChunks · Aug 3, 2017 · 91fd601 · 91fd601
1 parent aeeefb2
commit 91fd601
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/scripts/snakefiles/rules/sartools_targetfile.rules b/scripts/snakefiles/rules/sartools_targetfile.rules
@@ -56,7 +56,7 @@ rule sartools_targetfile:
         for id in range(len(sample_ids)):
             cond = sample_conditions[id]
             counts = expand(cwd + "/" + sample_dir + "/" + sample_ids[id] + "/" + sample_ids[id] + "_{preprocess}.txt", preprocess=wildcards.preprocess)
-            f.write(sample_ids[id] + "\t" + counts[0] + "\t" + cond + "\n")
+            f.write(sample_ids[id] + "\t" + counts[0] + "\t" + str(cond) + "\n")
         f.close()
 #        sys.stdout.close()