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typo in variable name
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jvanheld committed Sep 23, 2018
1 parent c251676 commit cd20333
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion scripts/RSnakeChunks/R/edger_analysis.R
Original file line number Diff line number Diff line change
Expand Up @@ -63,7 +63,7 @@ edger.analysis <- function(counts,
## Complete the analysis of edgeR result table
edger.result.table <- data.frame("gene.id" = row.names(edger.tt$table),
"mean" = 10^(edger.tt$table$logCPM),
"log2Mean" = edger.tt$table$logCPM,
"log2mean" = edger.tt$table$logCPM,
"log2FC" = edger.tt$table$logFC,
"pvalue" = edger.tt$table$PValue,
"padj" = edger.tt$table$FDR)
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