added && between commands of homer rule

SnakeChunks · Aug 18, 2018 · ceaa64a · ceaa64a
1 parent 431ba42
commit ceaa64a
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/scripts/snakefiles/rules/homer.rules b/scripts/snakefiles/rules/homer.rules
@@ -90,9 +90,9 @@ rule homer:
     shell:"""
 (makeTagDirectory {params.treatment_tag} -genome {params.genome} -checkGC {input.treatment} -format bed
 makeTagDirectory {params.control_tag} -genome {params.genome} -checkGC {input.control} -format bed
-findPeaks {params.treatment_tag} -style {params.style} -L {params.L} -P {params.P} -F {params.F} -fdr {params.fdr} -gsize {params.genome_size} -fragLength {params.frag_length} -o {params.treatment_tag}/peaks.txt -i {params.control_tag}
-pos2bed.pl {params.treatment_tag}/peaks.txt > {output}
-makeUCSCfile {params.treatment_tag} -o auto
+findPeaks {params.treatment_tag} -style {params.style} -L {params.L} -P {params.P} -F {params.F} -fdr {params.fdr} -gsize {params.genome_size} -fragLength {params.frag_length} -o {params.treatment_tag}/peaks.txt -i {params.control_tag} &&
+pos2bed.pl {params.treatment_tag}/peaks.txt > {output} &&
+makeUCSCfile {params.treatment_tag} -o auto &&
 makeUCSCfile {params.control_tag} -o auto) &> {log} \
 || (touch {output})
 """