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# France Genomique Workpackage 2.6 - Gene Regulation
*Claire Rioualen - Apr. 5th, 2017*
# SnakeChunks

This git repository holds shared code for the analysis of Next
*Claire Rioualen - Jun. 29th, 2017*

This package was developed as part of the
France Genomique Workpackage 2.6 - Gene Regulation.

It contains shared code for the analysis of Next
Generation Sequencing data related to gene regulation: ChIP-seq,
RNA-seq, and related technologies.

Gene-regulation is currently in version 4.0.

**A full documentation can be found on [Read The Docs](http://gene-regulation.readthedocs.io).**
Current version: 4.0.

We have chosen to use the [Snakemake workflow management system](https://bitbucket.org/snakemake/snakemake/wiki/Home)[1]
in order to build reproducible and flexible NGS analysis pipelines.

**A full documentation can be found on [Read The Docs](http://snakechunks.readthedocs.io).**

![](img/rule.png)


Expand All @@ -20,7 +24,7 @@ in order to build reproducible and flexible NGS analysis pipelines.
- Claire Rioualen <claire.rioualen@inserm.fr>
- Jacques van Helden <Jacques.van-helden@univ-amu.fr>

# References
# Reference

1. Köster, Johannes and Rahmann, Sven. "Snakemake - A scalable bioinformatics workflow engine". Bioinformatics 2012.

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