renamed argument count.table -> countFile

SnakeChunks · Aug 11, 2018 · f286034 · f286034
1 parent dc9cd4d
commit f286034
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/scripts/RSnakeChunks/misc/rna-seq_normalisation_tests.R b/scripts/RSnakeChunks/misc/rna-seq_normalisation_tests.R
@@ -88,7 +88,7 @@ if (!is.null(opt$rsnakechunks_dir)) {
 
 ## ---- Run the analysis ----
 RNAseqAnalysis(
-  count.table = opt$count_table,
+  countFile = opt$count_table,
   configFile = opt$config_file,
   main.dir = opt$main_dir,
   result.dir = opt$output_dir,