Collapsing ADATs strips the PlateScale information in Header #86
Comments
stufield
added
enhancement
GSE
stufield
added a commit
to stufield/SomaDataIO
that referenced
this issue
Mar 18, 2024
- collapseAdats() now does a better job of
maintaining useful information when combining
ADATs during the collapse
- PlateScale* and Cal* information is now
merged, rather than concatenated, resulting
in shorter set of attributes
- new values in downstream ADATs are maintained, and no longer lost when written
- the majority of HEADER iformation is still
that of the first, initial ADAT in the list
- the stopifnot() call gets more clear error
message
- closes SomaLogic#86
stufield
added a commit
to stufield/SomaDataIO
that referenced
this issue
Mar 18, 2024
- collapseAdats() now does a better job of
maintaining useful information when combining
ADATs during the collapse
- PlateScale* and Cal* information is now
merged, rather than concatenated, resulting
in shorter set of attributes
- new values in downstream ADATs are maintained, and no longer lost when written
- the majority of HEADER iformation is still
that of the first, initial ADAT in the list
- the stopifnot() call gets more clear error
message
- closes SomaLogic#86
stufield
added a commit
to stufield/SomaDataIO
that referenced
this issue
Mar 18, 2024
- collapseAdats() now does a better job of
maintaining useful information when combining
ADATs during the collapse
- PlateScale* and Cal* information is now
merged, rather than concatenated, resulting
in shorter set of attributes
- new values in downstream ADATs are maintained, and no longer lost when written
- the majority of HEADER iformation is still
that of the first, initial ADAT in the list
- the stopifnot() call gets more clear error
message
- closes SomaLogic#86
stufield
added a commit
to stufield/SomaDataIO
that referenced
this issue
Mar 18, 2024
- `collapseAdats()` now does a better job of
maintaining useful information when combining
ADATs during the collapse
- `PlateScale*` and `Cal*` information is now
merged, rather than concatenated, resulting
in shorter set of attributes
- new values in downstream ADATs are maintained, and no longer lost when written
- the majority of HEADER information is still
that of the first, initial ADAT in the list
- the `stopifnot()` call gets more clear error message
- closes SomaLogic#86
stufield
added a commit
to stufield/SomaDataIO
that referenced
this issue
Mar 18, 2024
- `collapseAdats()` now does a better job of
maintaining useful information when combining
ADATs during the collapse
- `PlateScale*` and `Cal*` information is now
merged, rather than concatenated, resulting
in shorter set of attributes
- new values in downstream ADATs are maintained, and no longer lost when written
- the majority of HEADER information is still
that of the first, initial ADAT in the list
- the `stopifnot()` call gets more clear error message
- closes SomaLogic#86
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Problem
When combining ADAT files in
loadAdatsAsList(), the header information is retained for only the first file.This is by design because hundreds of ADATs could be combined, bloating the attributes.
However, the
PlateScaleinformation could be of value.Feature
Modify the
PlateScalekey-value pair to retain the scaling information from all the ADATs in the collapsed list.Notify: @wschwarzmann
Priority Level
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