Merge pull request #39 from SpeysideHEP/py312

Improve compatibility for Python 3.12
SpeysideHEP · Jun 21, 2024 · 361a188 · 361a188
2 parents 7ffc4f0 + 81d8df3
commit 361a188
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Showing 8 changed files with 17 additions and 10 deletions.
diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
@@ -18,7 +18,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.8", "3.9", "3.10", "3.11"]
+        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
         os: [ubuntu-latest, macos-latest]
 
     steps:

diff --git a/.zenodo.json b/.zenodo.json
@@ -1,8 +1,8 @@
 {
     "description": "smooth inference for reinterpretation studies",
     "license": "MIT",
-    "title": "SpeysideHEP/spey: v0.1.9",
-    "version": "v0.1.9",
+    "title": "SpeysideHEP/spey: v0.1.10",
+    "version": "v0.1.10",
     "upload_type": "software",
     "creators": [
         {
@@ -31,7 +31,7 @@
         },
         {
             "scheme": "url",
-            "identifier": "https://github.com/SpeysideHEP/spey/tree/v0.1.9",
+            "identifier": "https://github.com/SpeysideHEP/spey/tree/v0.1.10",
             "relation": "isSupplementTo"
         },
         {

diff --git a/docs/known_issues.rst b/docs/known_issues.rst
@@ -3,6 +3,4 @@ Known Issues
 
 * It has been observed that the Scipy version and its compiler, which is used for maximising and profiling the likelihood can have a slight effect on the results.
 
-* NumPy v2.0.0 does not work with autograd, which is used in "default_pdf.XXX" likelihoods. The dependencies are reformulated accordingly.
-
-* There are some dependency issues in some sub-versions of Python 3.12. This is due to deprecated system packages. Updates can be followed in PR `#39 <https://github.com/SpeysideHEP/spey/pull/39>`_.
+* NumPy v2.0.0 does not work with autograd, which is used in "default_pdf.XXX" likelihoods. The dependencies are reformulated accordingly.
diff --git a/docs/releases/changelog-v0.1.md b/docs/releases/changelog-v0.1.md
@@ -76,6 +76,9 @@ Specific upgrades for the latest release can be found [here](https://github.com/
   so numpy version has been limited to less than 2.0.
   ([#40](https://github.com/SpeysideHEP/spey/pull/40))
 
+* Compatibility issues have been fixed in Python 3.12
+  ([#39](https://github.com/SpeysideHEP/spey/pull/39))
+
 ## Contributors
 
 This release contains contributions from (in alphabetical order):

diff --git a/setup.py b/setup.py
@@ -13,6 +13,7 @@
     "semantic_version~=2.10",
     "tqdm>=4.64.0",
     "requests>=2.31.0",
+    "setuptools",
 ]
 
 backend_plugins = [

diff --git a/src/spey/_version.py b/src/spey/_version.py
@@ -1,3 +1,3 @@
 """Version number (major.minor.patch[-label])"""
 
-__version__ = "0.1.9"
+__version__ = "0.1.10-beta"
diff --git a/src/spey/base/model_config.py b/src/spey/base/model_config.py
@@ -88,7 +88,7 @@ def fixed_poi_bounds(
     def rescale_poi_bounds(
         self, allow_negative_signal: bool = True, poi_upper_bound: Optional[float] = None
     ) -> List[Tuple[float, float]]:
-        """
+        r"""
         Rescale bounds for POI.
 
         Args:

diff --git a/src/spey/system/webutils.py b/src/spey/system/webutils.py
@@ -105,7 +105,12 @@ def check_updates() -> None:
         version = __version__
         if pypi_version:
             log.debug(f"Curernt version {version}, latest version {pypi_version}.")
-            if Version(version) < Version(pypi_version):
+            if "beta" in Version(version).prerelease:
+                log.warning(
+                    f"A prerelease version of Spey is in use: {version}. "
+                    f"Latest stable version is {pypi_version}."
+                )
+            elif Version(version) < Version(pypi_version):
                 log.warning(
                     f"A newer version ({pypi_version}) of Spey is available. "
                     f"Current version is {version}."