MATLAB functions to create and handle protein allocation models based on the COBRA format
AUTHOR
Tobias Benedikt Alter
Institute of Applied Microbiology, RWTH Aachen University
tobias.alter@rwth-aachen.de
INSTALLATION
Copy or clone files and folders to your hard drive. Matlab 2018 (or higher) (https://de.mathworks.com/products/matlab.html), Gurobi Solver 8 (or higher) (www.gurobi.com/), and the COBRA toolbox (https://opencobra.github.io/cobratoolbox/stable/) are needed. For an extended example refer to the examplePAM.m script.
REMARKS
The stoichiometric reconstruction of E. coli K12 MG1655 provided in the example was taken from the BiGG model database (http://bigg.ucsd.edu/).