The main research group running Squalomix consortium also participates in the Medaka seciton of NBRP (National Bioresource Project) administered by MEXT, Japan. This page catalogues existing data provision sites about medaka fishes and serves as their comprehensive gateway.
Scheduled maintenance of the web server MedakaBase will also be announced in this page.
Genome Browser of Medaka Hd-rR at Ensembl
Representative genome of Medaka Hd-rR at NCBI Genome
Gene models on the representative genome of Medaka Hd-rR at NCBI
Genome Browser Genome Data Viewer at NCBI
Medaka Omics Data Portal at Tu Lab
UTGB Medaka Genome Browser
(link to 'unanchored contigs': https://utgenome.org/medaka_v2/#!Assembly.md; http://viewer.shigen.info/medaka/download.php)
Genome assembly of Medaka Hd-rR including the unanchored contigs at NCBI
All Oryzias genome assemblies avilable at NCBI
MedakaBase - web server for medaka fish biology by NBRP
Central page of NBRP Medaka
IGV - Integrative genomics viewer for desk-top visualization
JBrowse2 - The next-generation genome browser for desk-top visualization
gVolante - interface for multi-faceted genome/transcriptome assembly assessment
aLeaves - operable sequence collection for molecular phylogeny inference
MAFFT - multiple sequence alignment
Gene Ontology Resource - the world’s largest source of information on the functions of genes
g:Profiler - interoperable web service for functional enrichment analysis and gene identifier mapping
Genome assemblies for Oryzias species at NCBI Genome
Oryzias latipes at NCBI Taxonomy
The taxon Beloniformes including Oryzias latipes at the tree browser OneZoom
Write to nbrp.medaka.info [at] gmail.com if you have any questions.
See announcements etc. from NBRP Medaka Informatics Team on Twitter