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bowtie2 added #251
bowtie2 added #251
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with samtools for to immediately convert sam to bam files
Hi Holly, thanks for the PR. This is an essential bioinfo tool that is missing from our collection. I was able to build the docker image successfully and was able to align some single end sars-cov-2 reads to it's assembly, followed by I have some minor suggestions for the dockerfile that I would like to put forward before we merge the PR and build the image on dockerhub and quay. I'll make comments on the dockerfile & README.md |
OK, I made my comments. Please let me know if you have any questions or if I can clarify anything. Thank you! |
remove unused variables and folders
Changes were made as suggested and tested locally. Thanks for your feedback! |
Awesome, thank you. Tested out great on my end again. I will merge and push to dockerhub and quay. |
The docker image is now available on dockerhub and quay. Thank you for the PR! https://hub.docker.com/r/staphb/bowtie2/tags?page=1&ordering=last_updated |
With samtools included to immediately convert sam files to bam files