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add dockerfile for pgma #290

Merged
merged 4 commits into from
Feb 8, 2022
Merged

add dockerfile for pgma #290

merged 4 commits into from
Feb 8, 2022

Commits on Feb 8, 2022

  1. add dockerfile for pgma

    @rpetit3
    rpetit3 committed Feb 8, 2022
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  2. Add dokerfile version

    @rpetit3
    rpetit3 committed Feb 8, 2022
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  3. Add quote

    @rpetit3
    rpetit3 committed Feb 8, 2022
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  4. updated pmga readme - fixed path for blastdbs 

    Got this error on my first attempt, wound up just being a small typo

```
$ docker run --rm -u $(id -u):$(id -g) -v ${PWD}:/data robert/pmga:latest pmga /data/GCF_021535585.1_ASM2153558v1_genomic.Ngonorrhoeae.fna --blast /pmga/blastdb -t 4 -o /data/Ngonorrhoeae-pmga-test
2022-02-08 15:49:39:root:ERROR - Input BLAST directory (/pmga/blastdb) does not exist, please verify and try again
```
    @kapsakcj
    kapsakcj committed Feb 8, 2022
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