Major Workflow Updates and Fixes
This one took awhile!
- Cecret
- Bug Fixes
- Updates for Pangolin V3
- Configuration file changes
- Monroe
- Updates for Pangolin V3
- Monroe ONT
- Removed barcode prefix to allow broader naming schemes
- Dryad
- Bug Fixes
- Added mlst formatting process
- Added mapping and coverage processes
- Updated amrfinder_summary