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Stanford SCGPM Bioinformatics

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  1. SJM SJM Public

    Simple Job Manager

    C++ 56 26

  2. loom loom Public archive

    A tool for running bioinformatics workflows locally or in the cloud.

    Python 29 8

  3. HugeSeq HugeSeq Public

    For original Nature Biotechnology Publication (Q1 2012)

    Python 24 16

  4. mvp_aaa_codelabs mvp_aaa_codelabs Public

    Queries to perform qc and analysis on genomes in BigQuery

    HTML 22 5

  5. Hummingbird Hummingbird Public

    Hummingbird: Efficient Performance Prediction for Executing Genomic Applications in the Cloud: https://doi.org/10.1093/bioinformatics/btab161

    Python 19 4

  6. personal-health-dashboard personal-health-dashboard Public

    Jupyter Notebook 17 4

Repositories

Showing 10 of 86 repositories
  • Swarm Public

    Swarm: A Federated Cloud Framework for Large-scale Variant Analysis: https://doi.org/10.1371/journal.pcbi.1008977

    StanfordBioinformatics/Swarm’s past year of commit activity
    Java 4 Apache-2.0 0 0 0 Updated Jul 19, 2024
  • Hummingbird Public

    Hummingbird: Efficient Performance Prediction for Executing Genomic Applications in the Cloud: https://doi.org/10.1093/bioinformatics/btab161

    StanfordBioinformatics/Hummingbird’s past year of commit activity
    Python 19 Apache-2.0 4 4 0 Updated Jul 19, 2024
  • GBSC_Billing Public

    This repository holds the scripts that allow the GBSC to bill its PIs for storage and compute usage on our cluster, cloud services, and bioinformatics consulting.

    StanfordBioinformatics/GBSC_Billing’s past year of commit activity
    Python 0 1 14 0 Updated Jul 3, 2024
  • trellis-mvp-functions Public

    Trellis serverless data management framework for variant calling of VA MVP whole-genome sequencing data.

    StanfordBioinformatics/trellis-mvp-functions’s past year of commit activity
    Python 6 1 15 2 Updated Jun 18, 2024
  • gcp_utils Public

    Scripts to manage access to the Google Cloud Platform

    StanfordBioinformatics/gcp_utils’s past year of commit activity
    Shell 1 1 0 0 Updated May 23, 2024
  • encode_utils Public

    Tools that are useful to any ENCODE submitting group.

    StanfordBioinformatics/encode_utils’s past year of commit activity
    Python 3 MIT 11 1 0 Updated Jul 6, 2023
  • htan Public
    StanfordBioinformatics/htan’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Jun 16, 2023
  • trellis-docs Public

    Read the Docs source for Trellis data management framework

    StanfordBioinformatics/trellis-docs’s past year of commit activity
    Python 1 MIT 0 1 0 Updated May 5, 2023
  • hubmap Public
    StanfordBioinformatics/hubmap’s past year of commit activity
    0 0 0 0 Updated Apr 26, 2023
  • pulsar_lims Public

    A LIMS for ENCODE submitting labs.

    StanfordBioinformatics/pulsar_lims’s past year of commit activity
    Ruby 3 1 191 10 Updated Apr 21, 2023
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