Download
pip install https://github.com/StanleyWangTW/tigersyn/archive/release.zip
Usage
import tigersyn
tigersyn.run('s', r'C:\T1w_dir', r'C:\output_dir')
tigersyn.run('s', r'C:\T1w_dir\**\*.nii.gz', r'C:\output_dir')
tigersyn.run('s', r'C:\T1w_dir\**\*.nii.gz') # storing output in the same dir
tigersyn.run('sz', r'C:\T1w_dir') # Force storing nii.gz format
tigersyn.predict_age(r'aseg_mask.nii.gz')s: Producing SynthSeg mask
h: Producing hippocampus mask
z: Force storing nii.gz format
Syntheseg labels
| Label | Structure | Label | Structure |
|---|---|---|---|
| 2 | Left Cerebral WM | 41 | Right Cerebral WM |
| 3 | Left Cerebral Cortex | 42 | Right Cerebral Cortex |
| 4 | Left Lateral Ventricle | 43 | Right Lateral Ventricle |
| 5 | Left Inf Lat Vent | 44 | Right Inf Lat Vent |
| 7 | Left Cerebellum WM | 46 | Right Cerebellum WM |
| 8 | Left Cerebellum Cortex | 47 | Right Cerebellum Cortex |
| 10 | Left Thalamus | 49 | Right Thalamus |
| 11 | Left Caudate | 50 | Right Caudate |
| 12 | Left Putamen | 51 | Right Putamen |
| 13 | Left Pallidum | 52 | Right Pallidum |
| 14 | 3rd Ventricle | 53 | Right Hippocampus |
| 15 | 4th Ventricle | 54 | Right Amygdala |
| 16 | Brain Stem | 58 | Right Accumbens area |
| 17 | Left Hippocampus | 60 | Right VentralDC |
| 18 | Left Amygdala | ||
| 24 | CSF | ||
| 26 | Left Accumbens area | ||
| 28 | Left VentralDC |