kath

VERY NICE TOOL DESCRIPTION

Install

sudo apt update
sudo apt install python3 python3-dev python3-pip
python install -r requirements.txt

Download files required for spliceAI and test tool, output should be the same as output.vcf in tests/tools/spliceai/output.vcf

./install_spliceai.sh
spliceai -I ./tests/tools/spliceai/input.vcf -O ./tests/tools/spliceai/actual_output.vcf -R ./tools/spliceai/hg19.fa -A grch37

Name		Name	Last commit message	Last commit date
Latest commit History 158 Commits
GUI		GUI
data_collection		data_collection
docs		docs
prime_prompt		prime_prompt
tests		tests
tools		tools
README.md		README.md
install_revel.sh		install_revel.sh
install_spliceai.sh		install_spliceai.sh
requirements.txt		requirements.txt